Dear Bruce Try the SwissSidechain PyMOL plugin and database
https://www.swisssidechain.ch/visualization/pymol.php Annemarie ____________________________________________________________ Dr. Annemarie Honegger Dept. of Biochemistry Zürich University Winterthurerstrasse 190 8057 Zürich Switzerland e-mail: honeg...@bioc.uzh.ch phone: +41 44 635 55 62 fax: +41 44 635 57 12 > On 22 Jul 2019, at 14:02, pymol-users-requ...@lists.sourceforge.net wrote: > > Send PyMOL-users mailing list submissions to > pymol-users@lists.sourceforge.net > > To subscribe or unsubscribe via the World Wide Web, visit > https://lists.sourceforge.net/lists/listinfo/pymol-users > or, via email, send a message with subject or body 'help' to > pymol-users-requ...@lists.sourceforge.net > > You can reach the person managing the list at > pymol-users-ow...@lists.sourceforge.net > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of PyMOL-users digest..." > > > Today's Topics: > > 1. amino acids displayed for mutagenesis. Hyp? PTMs? (Bruce Onisko) > > > ---------------------------------------------------------------------- > > Message: 1 > Date: Sun, 21 Jul 2019 22:02:08 -0700 > From: Bruce Onisko <bconi...@gmail.com> > To: pymol-users@lists.sourceforge.net > Subject: [PyMOL] amino acids displayed for mutagenesis. Hyp? PTMs? > Message-ID: > <CANFKuAo=jqwazy5umf0aeisdwz__emjapcqzp4s6aqyzo9m...@mail.gmail.com> > Content-Type: text/plain; charset="utf-8" > > Hi all, > > I need to 'mutate" a residue of a protein to a hydroxyproline, aka HYP. > > In Wizard|Mutagenesis, I see how to choose 1 of about 20 other amino acids, > but I hydroxyproline is not in the list. > > Does anyone know how I create such an entry? > > Or should I learn how to edit a proline? (Using Builder I assume?) > > Anyone creating post-translational modifications (eg SER-O-phosphate) would > have a similar question........ > > Thanks! > > Bruce > > PS \PyMOL\share\pymol\data\chempy\fragments\ has all the amino acids, but > not what i need. > -------------- next part -------------- > An HTML attachment was scrubbed... > > ------------------------------ > > > > ------------------------------ > > Subject: Digest Footer > > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users > Unsubscribe: > https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe > > ------------------------------ > > End of PyMOL-users Digest, Vol 158, Issue 17 > ******************************************** _______________________________________________ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
