Dear all, I just read "PyTMs: a useful PyMol plugin for modelling common post-translational modifications" and it looks great for my needs.
However after an hour of frustration I have not been able to download and install the plugin. (I had no trouble downloading, installing and using the SwissModel plugin.......) Has anyone done this recently? If so maybe point me to a working link, or step me through the process please? Thanks! Bruce On Mon, Jul 22, 2019 at 5:19 AM ahoneg <annemarie.honeg...@uzh.ch> wrote: > Dear Bruce > > Try the SwissSidechain PyMOL plugin and database > > https://www.swisssidechain.ch/visualization/pymol.php > > Annemarie > ____________________________________________________________ > > Dr. Annemarie Honegger > Dept. of Biochemistry > Zürich University > Winterthurerstrasse 190 > 8057 Zürich > Switzerland > > e-mail: honeg...@bioc.uzh.ch > phone: +41 44 635 55 62 > fax: +41 44 635 57 12 > > > > > On 22 Jul 2019, at 14:02, pymol-users-requ...@lists.sourceforge.net > wrote: > > > > Send PyMOL-users mailing list submissions to > > pymol-users@lists.sourceforge.net > > > > To subscribe or unsubscribe via the World Wide Web, visit > > https://lists.sourceforge.net/lists/listinfo/pymol-users > > or, via email, send a message with subject or body 'help' to > > pymol-users-requ...@lists.sourceforge.net > > > > You can reach the person managing the list at > > pymol-users-ow...@lists.sourceforge.net > > > > When replying, please edit your Subject line so it is more specific > > than "Re: Contents of PyMOL-users digest..." > > > > > > Today's Topics: > > > > 1. amino acids displayed for mutagenesis. Hyp? PTMs? (Bruce Onisko) > > > > > > ---------------------------------------------------------------------- > > > > Message: 1 > > Date: Sun, 21 Jul 2019 22:02:08 -0700 > > From: Bruce Onisko <bconi...@gmail.com> > > To: pymol-users@lists.sourceforge.net > > Subject: [PyMOL] amino acids displayed for mutagenesis. Hyp? PTMs? > > Message-ID: > > <CANFKuAo= > jqwazy5umf0aeisdwz__emjapcqzp4s6aqyzo9m...@mail.gmail.com> > > Content-Type: text/plain; charset="utf-8" > > > > Hi all, > > > > I need to 'mutate" a residue of a protein to a hydroxyproline, aka HYP. > > > > In Wizard|Mutagenesis, I see how to choose 1 of about 20 other amino > acids, > > but I hydroxyproline is not in the list. > > > > Does anyone know how I create such an entry? > > > > Or should I learn how to edit a proline? (Using Builder I assume?) > > > > Anyone creating post-translational modifications (eg SER-O-phosphate) > would > > have a similar question........ > > > > Thanks! > > > > Bruce > > > > PS \PyMOL\share\pymol\data\chempy\fragments\ has all the amino acids, but > > not what i need. > > -------------- next part -------------- > > An HTML attachment was scrubbed... > > > > ------------------------------ > > > > > > > > ------------------------------ > > > > Subject: Digest Footer > > > > _______________________________________________ > > PyMOL-users mailing list > > PyMOL-users@lists.sourceforge.net > > https://lists.sourceforge.net/lists/listinfo/pymol-users > > Unsubscribe: > https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe > > > > ------------------------------ > > > > End of PyMOL-users Digest, Vol 158, Issue 17 > > ******************************************** > > > > _______________________________________________ > PyMOL-users mailing list > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > Unsubscribe: > https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
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