Dear pymol users,
I am installing pymol in Centos 7 according to the guide in
https://pymolwiki.org/index.php/Linux_Install. I encounter an error of "error:
command 'g++' failed with exit status 1". A fill output of the install command
is as following:
running build
running build_py
running build_ext
building 'pymol._cmd' extension
g++ -pthread -B /home/sunyp/software/anaconda/build/compiler_compat
-Wl,--sysroot=/ -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE
-DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC
-D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include
-Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5
-Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src
-I/home/sunyp/software/anaconda/build/lib/python3.7/site-packages/numpy/core/include
-I/home/sunyp/software/anaconda/build/include
-I/home/sunyp/software/anaconda/build/include/freetype2
-I/home/sunyp/software/anaconda/build/include/libxml2
-I/home/sunyp/software/anaconda/build/include/python3.7m -c -MMD
layer1/Scene.cpp -o build/temp.linux-x86_64-3.7/layer1/Scene.o
-Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing
-Wno-char-subscripts -O3 -fopenmp
g++ -pthread -B /home/sunyp/software/anaconda/build/compiler_compat
-Wl,--sysroot=/ -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE
-DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC
-D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include
-Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5
-Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src
-I/home/sunyp/software/anaconda/build/lib/python3.7/site-packages/numpy/core/include
-I/home/sunyp/software/anaconda/build/include
-I/home/sunyp/software/anaconda/build/include/freetype2
-I/home/sunyp/software/anaconda/build/include/libxml2
-I/home/sunyp/software/anaconda/build/include/python3.7m -c -MMD
layer1/SceneView.cpp -o build/temp.linux-x86_64-3.7/layer1/SceneView.o
-Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing
-Wno-char-subscripts -O3 -fopenmp
g++ -pthread -B /home/sunyp/software/anaconda/build/compiler_compat
-Wl,--sysroot=/ -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE
-DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC
-D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include
-Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5
-Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src
-I/home/sunyp/software/anaconda/build/lib/python3.7/site-packages/numpy/core/include
-I/home/sunyp/software/anaconda/build/include
-I/home/sunyp/software/anaconda/build/include/freetype2
-I/home/sunyp/software/anaconda/build/include/libxml2
-I/home/sunyp/software/anaconda/build/include/python3.7m -c -MMD layer4/Cmd.cpp
-o build/temp.linux-x86_64-3.7/layer4/Cmd.o -Werror=return-type
-Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer1/SceneView.cpp:4:41: fatal error: glm/ext/vector_relational.hpp: No such
file or directory
#include <glm/ext/vector_relational.hpp>
^
compilation terminated.
layer1/Scene.cpp: In function ‘void SceneOriginSet(PyMOLGlobals*, const float*,
int)’:
layer1/Scene.cpp:2557:42: error: no matching function for call to
‘make_vec3(glm::vec3&)’
I->m_view.translate(glm::make_vec3(v1)); /* offset view to compensate */
^
layer1/Scene.cpp:2557:42: note: candidate is:
In file included from /usr/include/glm/gtc/type_ptr.hpp:178:0,
from layer1/Ray.h:23,
from layer1/View.h:23,
from layer1/PyMOLObject.h:28,
from layer1/Scene.cpp:32:
/usr/include/glm/gtc/type_ptr.inl:336:40: note: template<class T> glm::tvec3<T,
(glm::precision)0u> glm::make_vec3(const T*)
GLM_FUNC_QUALIFIER tvec3<T, defaultp> make_vec3(T const * const ptr)
^
/usr/include/glm/gtc/type_ptr.inl:336:40: note: template argument
deduction/substitution failed:
layer1/Scene.cpp:2557:42: note: mismatched types ‘const T*’ and
‘glm::tvec3<float, (glm::precision)0u>’
I->m_view.translate(glm::make_vec3(v1)); /* offset view to compensate */
^
error: command 'g++' failed with exit status 1
Would you be kind to help me figure out what's wrong with I installation? I
will appreciate much of any help.
Best regards._______________________________________________
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