Thank you all for your help,
I am sorry for not framing my question clearly. So I want to learn
what percentage of residues are helical in each peptide structure (is this
possible on PyMOL?); then I can compute the difference in helical content %
between both structures.
Many thanks,
Neena
On Sun, 11 Sept 2022 at 09:15, Thomas Holder <tho...@thomas-holder.de>
wrote:
> Hi Neena,
>
> Not sure if I understand your question correctly, but if you are looking
> for the number of helix residues or the relative helix content, you can do
> this:
>
> count_helix = cmd.count_atoms("guide & ss H")
> count_all = cmd.count_atoms("guide")
> print("Number of helix residues:", count_helix)
> print("Relative helix content:", count_helix / count_all)
>
> Cheers,
>
> Thomas
>
>
>
> On Sat, Sep 10, 2022 at 1:37 PM Neena Susan Eappen <
> neenasusan...@gmail.com> wrote:
>
>> Hello PyMOL users,
>>
>> Could I please get some insights on this?
>>
>> Thank you,
>> Neena
>>
>> On Wed, 7 Sept 2022 at 12:06, Neena Susan Eappen <neenasusan...@gmail.com>
>> wrote:
>>
>>> Hello PyMOL users,
>>>
>>> I was wondering how to extract the total extent of helicity between two
>>> peptide structures on Pymol.
>>>
>>>
>>> [image: image.png]
>>> [image: image.png]
>>> Any insight would be appreciated.
>>>
>>> Many thanks,
>>> Neena
>>>
>>> _______________________________________________
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