Dear Thomas,
Thank you for getting back quickly and on your work on PyMOL. Looking
forward to testing the patched version.
Best,
Engin
On 3/20/25 9:44 AM, Thomas Stewart wrote:
Hello Engin and Vaheh,
Both of these are simply oversights on my part and will be fixed in
the next patch (3.1.4.1). For this update, I completely rewrote the
code for the Contents Panel and there appears to be certain ASHLC
menus that are not pulling the correct set of menu options for their
object type.
I will also add the parentheses back to the selections! I'm honestly
surprised I didn't immediately notice this in my testing but it
should be a quick fix.
Thank you for reporting these issues and let me know if you find
anything else.
Thanks again,
Thomas
Thomas Stewart | Senior Developer I | Product Manager, PyMOL
Schrödinger, Inc. <https://schrodinger.com/>
On Thu, Mar 20, 2025 at 9:08 AM Oganesyan, Vaheh
<vaheh.oganes...@astrazeneca.com> wrote:
To add a bit to Engin’s message: under A when selecting “extract”
I’m getting “copy” instead. I think it is a bug in 3.1.4.
Thank you.
Vaheh
*From:*Engin Özkan <eoz...@uchicago.edu>
*Sent:* Wednesday, March 19, 2025 8:02 PM
*To:* pymol-users@lists.sourceforge.net
*Subject:* [PyMOL] PyMOL 3.1.4
Hi,
In the latest version of PyMOL, 3.1.4, I cannot see if an item in the
list on the right-hand column is a selection or an object. The
parantheses were really useful before. Is this intentional or an
oversight?
But more urgently, for a selection I made, I no longer see the
options
under "A" many options I use every session, such as copy to object,
extract object, rename selection, align, etc. I am sure I can do
these
actions via command-line just fine, but not nearly with the same
ease of
use.
Also delete selection has been replaced by delete selections. Why
plural? I am scared to click on it, especially now that I don't know
which items are selections and which are objects. I'll downgrade
for now
to be able to use selections effectively in PyMOL; I assume many
users
also depend on their ability to modify, align and rename
selections easily.
(And thanks for fixing some of the selection group bugs that
popped up
with v. 3 early on.)
Best,
Engin
--
Engin Özkan, Ph.D.
Associate Professor
Dept of Biochemistry and Molecular Biology
University of Chicago
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--
Engin Özkan, Ph.D.
Associate Professor
Dept of Biochemistry and Molecular Biology
University of Chicago
Phone: (773) 834-5498
http://ozkan.uchicago.edu
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