Hello Engin and Vaheh, Both of these are simply oversights on my part and will be fixed in the next patch (3.1.4.1). For this update, I completely rewrote the code for the Contents Panel and there appears to be certain ASHLC menus that are not pulling the correct set of menu options for their object type.
I will also add the parentheses back to the selections! I'm honestly surprised I didn't immediately notice this in my testing but it should be a quick fix. Thank you for reporting these issues and let me know if you find anything else. Thanks again, Thomas Thomas Stewart | Senior Developer I | Product Manager, PyMOL [image: Schrödinger, Inc.] <https://schrodinger.com/> On Thu, Mar 20, 2025 at 9:08 AM Oganesyan, Vaheh < vaheh.oganes...@astrazeneca.com> wrote: > To add a bit to Engin’s message: under A when selecting “extract” I’m > getting “copy” instead. I think it is a bug in 3.1.4. > > > > Thank you. > > > > Vaheh > > > > *From:* Engin Özkan <eoz...@uchicago.edu> > *Sent:* Wednesday, March 19, 2025 8:02 PM > *To:* pymol-users@lists.sourceforge.net > *Subject:* [PyMOL] PyMOL 3.1.4 > > > > Hi, > > In the latest version of PyMOL, 3.1.4, I cannot see if an item in the > list on the right-hand column is a selection or an object. The > parantheses were really useful before. Is this intentional or an oversight? > > But more urgently, for a selection I made, I no longer see the options > under "A" many options I use every session, such as copy to object, > extract object, rename selection, align, etc. I am sure I can do these > actions via command-line just fine, but not nearly with the same ease of > use. > > Also delete selection has been replaced by delete selections. Why > plural? I am scared to click on it, especially now that I don't know > which items are selections and which are objects. I'll downgrade for now > to be able to use selections effectively in PyMOL; I assume many users > also depend on their ability to modify, align and rename selections easily. > > (And thanks for fixing some of the selection group bugs that popped up > with v. 3 early on.) > > Best, > > Engin > > -- > Engin Özkan, Ph.D. > Associate Professor > Dept of Biochemistry and Molecular Biology > University of Chicago > > > > _______________________________________________ > PyMOL-users mailing list > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > Unsubscribe: > https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe > ------------------------------ > > *Confidentiality Notice: *This message is private and may contain > confidential and proprietary information. If you have received this message > in error, please notify us and remove it from your system and note that you > must not copy, distribute or take any action in reliance on it. Any > unauthorized use or disclosure of the contents of this message is not > permitted and may be unlawful. > > _______________________________________________ > PyMOL-users mailing list > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > Unsubscribe: > https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe >
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