Hello Richard, A Sunday 17 May 2009 22:11:31 escriguéreu: > Hello, > > Pytables looks like it could be very useful for storing results from > genomic analyses.
I hope so. At least, a handful of people in this area are already using it. > > Apologies if this is not the appropriate venue for installation issues. Yup. Questions like this are better addressed to the PyTables mailing list: https://lists.sourceforge.net/lists/listinfo/pytables-users [don't worry, I'm doing a copy now] > I am receiving a Seg fault with test_all() on the second round of "Checking > inheritance of filters on trees (open file version)." > > I recently installed HDF5 and a fresh Numpy. > > I don't have root access on this university machine (UCLA), but could get > admin help. In the meantime I will continue learning about pytables and > hope this can be worked out. > > Following is version info, stderror, then stdout. [clip] It seems that you have fallen into the same issue than everybody trying to use the newest version of HDF5 (1.8.3). Short story: they changed the API from 1.8.2 to 1.8.3 and public releases of PyTables needs to be patched and recompiled in order to adapt to the new API. Or, you can use HDF5 1.8.2. Another option is to use the subversion repository of PyTables, where the patch has already been applied. More info in: http://www.pytables.org/trac/ticket/225 Hope that helps, -- Francesc Alted "One would expect people to feel threatened by the 'giant brains or machines that think'. In fact, the frightening computer becomes less frightening if it is used only to simulate a familiar noncomputer." -- Edsger W. Dykstra ------------------------------------------------------------------------------ Crystal Reports - New Free Runtime and 30 Day Trial Check out the new simplified licensing option that enables unlimited royalty-free distribution of the report engine for externally facing server and web deployment. http://p.sf.net/sfu/businessobjects _______________________________________________ Pytables-users mailing list Pytables-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pytables-users
