On Thu, Oct 13, 2011 at 2:35 PM, Ranjit Chacko <rjcha...@gmail.com> wrote:
> That might be it. Here's the output:
>
> In [1]: import numexpr
>
> In [2]: print numexpr.use_vml
> True
>
> In [3]: print numexpr.get_vml_version()
>
>
> *** libmkl_mc.dylib *** failed with error : dlopen(libmkl_mc.dylib, 1):
> image not found
> *** libmkl_mc.dylib *** failed with error : dlopen(libmkl_mc.dylib, 1):
> image not found
> MKL FATAL ERROR: Cannot load neither libmkl_mc.dylib nor libmkl_mc.dylib
>
>
> Should I reinstall numexpr then?
>
Aha! I think we have found the problem. I would reinstall numexpr and make
sure that using VML / MKL is disabled.
Be Well
Anthony
>
> On Oct 13, 2011, at 10/13/11 11:26 AM, Anthony Scopatz wrote:
>
> Ooops I forgot! numexpr also might use mkl....
>
> Could you run the following code and report back the output?
>
>
> import numexpr
> print numexpr.use_vml
> print numexpr.get_vml_version()
>
>
> I bet numexpr was compiled expecting MKL, but since you don't have it, it
> fails. Thanks!
>
> On Thu, Oct 13, 2011 at 1:55 PM, Ranjit Chacko <rjcha...@gmail.com> wrote:
>
>> I don't remember how I installed it now actually. Is there a way for me to
>> check whether numpy is linked against MKL? I'm not sure how it could be
>> though, since I don't have the MKL framework on my computer at all.
>>
>> On Oct 13, 2011, at 10/13/11 10:28 AM, Anthony Scopatz wrote:
>>
>> Hmmm, is this also how how are you getting numpy?
>>
>> It may be the case that if your numpy is linked against MKL, that then
>> PyTables also needs to be linled against MKL.
>>
>> On Thu, Oct 13, 2011 at 12:00 PM, Ranjit Chacko <rjcha...@gmail.com>wrote:
>>
>>> I'm running Snow Leopard. I've tried installing pytables using both
>>> easy_install, and by downloading the source and compiling. I get the same
>>> errors either way.
>>>
>>> On Oct 13, 2011, at 10/13/11 7:55 AM, Anthony Scopatz wrote:
>>>
>>> Hmm... How did you install pytables? What platform are you on?
>>>
>>> On Thu, Oct 13, 2011 at 10:33 AM, Ranjit Chacko <rjcha...@gmail.com>wrote:
>>>
>>>> NumPy is working fine, and it passes all of its tests. I'm not sure why
>>>> there's a reference to MKL in the PyTables error though because I don't
>>>> have
>>>> that installed on my machine. Also I can't find where the HDF5 1.8.5
>>>> headers
>>>> might be. The only HDF5 libraries I can see on my machine are 1.8.7.
>>>>
>>>> Thanks,
>>>>
>>>> -Ranjit
>>>>
>>>> On Oct 12, 2011, at 10/12/11 9:15 PM, Anthony Scopatz wrote:
>>>>
>>>> Hello Ranjit,
>>>>
>>>> Does NumPy Work? To the best of my knowledge, numpy is the only thing
>>>> in that stack that might link against the MKL. How are you getting numpy?
>>>>
>>>> Be Well
>>>> Anthony
>>>>
>>>> On Wed, Oct 12, 2011 at 7:51 PM, Ranjit Chacko <rjcha...@gmail.com>wrote:
>>>>
>>>>> I just tried to install pytables, and when I run tables.test() I get
>>>>> the following error:
>>>>>
>>>>>
>>>>> -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
>>>>> PyTables version: 2.3
>>>>> HDF5 version: 1.8.5-patch1
>>>>> NumPy version: 2.0.0.dev-073bc39
>>>>>
>>>>>
>>>>> *** libmkl_mc.dylib *** failed with error : dlopen(libmkl_mc.dylib, 1):
>>>>> image not found
>>>>> *** libmkl_mc.dylib *** failed with error : dlopen(libmkl_mc.dylib, 1):
>>>>> image not found
>>>>> MKL FATAL ERROR: Cannot load neither libmkl_mc.dylib nor
>>>>> libmkl_mc.dylib
>>>>>
>>>>>
>>>>> Also when I try to open a new file I get a warning about the library
>>>>> version being mismatched, and that "Headers are 1.8.5, library is 1.8.7".
>>>>>
>>>>> How do I fix this?
>>>>>
>>>>> Thanks,
>>>>>
>>>>> -Ranjit
>>>>>
>>>>>
>>>>>
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