Hi Anthony,
I'm using 1.8.7 on ranger. Here is the topmost error:
compile options: '-DNDEBUG=1 -DHAVE_BZ2_LIB=1 -Iblosc
-I/work/01020/cekees/ranger.gnu/build/ranger.gnu/lib/python2.7/site-packages/numpy/core/include
-I/work/01020/cekee
s/ranger.gnu/build/ranger.gnu/include
-I/work/01020/cekees/ranger.gnu/build/ranger.gnu/include/python2.7 -c'
extra options: '-Isrc -DH5_USE_16_API'
gcc: blosc/blosclz.c
gcc: src/H5ARRAY.c
In file included from
/work/01020/cekees/ranger.gnu/build/ranger.gnu/include/python2.7/Python.h:8,
from src/utils.h:1,
from src/H5ARRAY.c:4:
/work/01020/cekees/ranger.gnu/build/ranger.gnu/include/python2.7/pyconfig.h:1155:1:
warning: "_POSIX_C_SOURCE" redefined
In file included from
/work/01020/cekees/ranger.gnu/build/ranger.gnu/include/H5public.h:37,
from
/work/01020/cekees/ranger.gnu/build/ranger.gnu/include/hdf5.h:24,
from src/H5ATTR.h:19,
from src/H5ARRAY.c:1:
/share/apps/gcc_amd/4.4.5/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.4.5/include-fixed/features.h:199:1:
warning: this is the location of the previous definition
In file included from
/work/01020/cekees/ranger.gnu/build/ranger.gnu/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1972,
from
/work/01020/cekees/ranger.gnu/build/ranger.gnu/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from
/work/01020/cekees/ranger.gnu/build/ranger.gnu/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:15,
from src/utils.h:2,
from src/H5ARRAY.c:4:
/work/01020/cekees/ranger.gnu/build/ranger.gnu/lib/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2:
warning: #warning "Using deprecated NumPy
API, disable it by #defining NPY_NO_DEPRECATED_API"
/work/01020/cekees/ranger.gnu/build/ranger.gnu/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1666:
warning: '_import_array' defined but not use
d
gcc: blosc/blosc.c
blosc/blosc.c:79: error: expected '=', ',', ';', 'asm' or '__attribute__'
before 'barr_init'
On Wed, Mar 7, 2012 at 3:38 PM, Anthony Scopatz <scop...@gmail.com> wrote:
> Hi Chris,
>
> PyTables should work with HDF5 v1.8.7. (Apparently v1.8.8 is out but I
> haven't tested it with that.) What version are you using at TACC?
>
> Also, what is the top most build error that you are getting?
>
> Be Well
> Anthony
>
> On Wed, Mar 7, 2012 at 3:35 PM, Chris Kees <cek...@gmail.com> wrote:
>
>> Hi,
>>
>> I'm having some trouble building pytables on an HPC machine (ranger at
>> the texas advanced computing center). If I do a git checkout of v.2.1.2
>> pytables builds/installs fine. Anything more recent gives errors compiling
>> (related to blosc...). I would like to help get the main branch working on
>> this machine and was hoping I could get a recommendation of which version
>> of hdf5 I should be using to go with the main pytables branch.
>>
>> Thanks,
>> Chris
>>
>>
>> ------------------------------------------------------------------------------
>> Virtualization & Cloud Management Using Capacity Planning
>> Cloud computing makes use of virtualization - but cloud computing
>> also focuses on allowing computing to be delivered as a service.
>> http://www.accelacomm.com/jaw/sfnl/114/51521223/
>> _______________________________________________
>> Pytables-users mailing list
>> Pytables-users@lists.sourceforge.net
>> https://lists.sourceforge.net/lists/listinfo/pytables-users
>>
>>
>
>
> ------------------------------------------------------------------------------
> Virtualization & Cloud Management Using Capacity Planning
> Cloud computing makes use of virtualization - but cloud computing
> also focuses on allowing computing to be delivered as a service.
> http://www.accelacomm.com/jaw/sfnl/114/51521223/
> _______________________________________________
> Pytables-users mailing list
> Pytables-users@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/pytables-users
>
>
------------------------------------------------------------------------------
Virtualization & Cloud Management Using Capacity Planning
Cloud computing makes use of virtualization - but cloud computing
also focuses on allowing computing to be delivered as a service.
http://www.accelacomm.com/jaw/sfnl/114/51521223/
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