On Wed, Mar 7, 2012 at 5:18 PM, Francesc Alted <fal...@pytables.org> wrote:
> On Mar 7, 2012, at 3:14 PM, Francesc Alted wrote:
>
> > On Mar 7, 2012, at 1:57 PM, Chris Kees wrote:
> >
> >> Hi Anthony,
> >>
> >> I'm using 1.8.7 on ranger. Here is the topmost error:
> >>
> >> compile options: '-DNDEBUG=1 -DHAVE_BZ2_LIB=1 -Iblosc
> -I/work/01020/cekees/ranger.gnu/build/ranger.gnu/lib/python2.7/site-packages/numpy/core/include
> -I/work/01020/cekee
> >> s/ranger.gnu/build/ranger.gnu/include
> -I/work/01020/cekees/ranger.gnu/build/ranger.gnu/include/python2.7 -c'
> >> extra options: '-Isrc -DH5_USE_16_API'
> >> gcc: blosc/blosclz.c
> >> gcc: src/H5ARRAY.c
> >> In file included from
> /work/01020/cekees/ranger.gnu/build/ranger.gnu/include/python2.7/Python.h:8,
> >> from src/utils.h:1,
> >> from src/H5ARRAY.c:4:
> >>
> /work/01020/cekees/ranger.gnu/build/ranger.gnu/include/python2.7/pyconfig.h:1155:1:
> warning: "_POSIX_C_SOURCE" redefined
> >> In file included from
> /work/01020/cekees/ranger.gnu/build/ranger.gnu/include/H5public.h:37,
> >> from
> /work/01020/cekees/ranger.gnu/build/ranger.gnu/include/hdf5.h:24,
> >> from src/H5ATTR.h:19,
> >> from src/H5ARRAY.c:1:
> >>
> /share/apps/gcc_amd/4.4.5/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.4.5/include-fixed/features.h:199:1:
> warning: this is the location of the previous definition
> >> In file included from
> /work/01020/cekees/ranger.gnu/build/ranger.gnu/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1972,
> >> from
> /work/01020/cekees/ranger.gnu/build/ranger.gnu/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
> >> from
> /work/01020/cekees/ranger.gnu/build/ranger.gnu/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:15,
> >> from src/utils.h:2,
> >> from src/H5ARRAY.c:4:
> >>
> /work/01020/cekees/ranger.gnu/build/ranger.gnu/lib/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2:
> warning: #warning "Using deprecated NumPy
> >> API, disable it by #defining NPY_NO_DEPRECATED_API"
> >>
> /work/01020/cekees/ranger.gnu/build/ranger.gnu/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1666:
> warning: '_import_array' defined but not use
> >> d
> >> gcc: blosc/blosc.c
> >> blosc/blosc.c:79: error: expected '=', ',', ';', 'asm' or
> '__attribute__' before 'barr_init'
> >
> > Uf, that looks really ugly. Which compiler and version are you using?
> Can you look in this machine's thread.h and tell us the value of
> _POSIX_BARRIERS symbol?
>
> BTW, numexpr also uses the same parallel engine than blosc. As numexpr is
> a requisite for PyTables, I'm curious about if you have been able to
> compile it too.
>
>
Yes, I was able to compiler numexpr. The versions of pytables dependencies
I'm using are:
* Found numpy 1.7.0.dev-0b400cb package installed.
* Found numexpr 1.5.dev package installed.
* Found Cython 0.15.1+ package installed.
* Found HDF5 headers at
``/share/home/01020/cekees/proteus/ranger.gnu/include``, library at
``/share/home/01020/cekees/proteus
/ranger.gnu/lib``.
* Could not find LZO 2 headers and library; disabling support for it.
* Could not find LZO 1 headers and library; disabling support for it.
* Found bzip2 headers at ``/usr/include``, library at ``/usr/lib64``.
> -- Francesc Alted
>
>
>
>
>
>
>
>
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Virtualization & Cloud Management Using Capacity Planning
Cloud computing makes use of virtualization - but cloud computing
also focuses on allowing computing to be delivered as a service.
http://www.accelacomm.com/jaw/sfnl/114/51521223/
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