make also has an option of automatically detecting all loaded modules (via lsmod) and compiling the kernel only with support for currently loaded modules. Use make localmodconfig for that. Running it in a vm wouldn't be such a good idea since the module config for dom0 and appvms differ greatly however localmodconfig allows for the lsmod to be exported from another machine. So: in dom0: lsmod > lsmod qvm-copy-to-vm <build-appvm> lsmod in build vm make LSMOD=/home/user/QubesIncoming/dom0/lsmod localmodconfig
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