On Sat, 5 Feb 2005, Michael Kubovy wrote:
Following Brian Ripley's advice:
$ which g77 /sw/bin/g77
So I think you have fink.
I then found Makeconf, in /Library/Frameworks/R.framework/Versions/2.0.1/Resources/etc
I edited it according to Brian's advice. It had:
You didn't. You need to replace L/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2 appropriately.
FLIBS = -L/usr/local/lib -L/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2 -L/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2/../../.. -lfrtbegin -lg2c -lSystemwhich now is:FLIBS = -L/usr/local/lib -L/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2 -L/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2/../../.. -L/sw/bin -lg2c -lSystem
Nevertheless the install failed just as below. But the console complaint was slightly different from before:WARNING: ignoring environment value of R_HOME
* Installing *source* package 'Hmisc' ...
** libs
g77 -fno-common -g -O2 -c cidxcn.f -o cidxcn.o
g77 -fno-common -g -O2 -c cidxcp.f -o cidxcp.o
g77 -fno-common -g -O2 -c hoeffd.f -o hoeffd.o
g77 -fno-common -g -O2 -c jacklins.f -o jacklins.o
g77 -fno-common -g -O2 -c largrec.f -o largrec.o
gcc -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c ranksort.c -o ranksort.o
g77 -fno-common -g -O2 -c rcorr.f -o rcorr.o
g77 -fno-common -g -O2 -c wclosest.f -o wclosest.o
gcc -bundle -flat_namespace -undefined suppress -L/usr/local/lib -o Hmisc.so cidxcn.o cidxcp.o hoeffd.o jacklins.o largrec.o ranksort.o rcorr.o wclosest.o -L/usr/local/lib -L/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2 -L/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2/../../.. -L/sw/bin -lg2c -lSystem -lcc_dynamic -framework R
ld: warning -L: directory name (/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2) does not exist
ld: warning -L: directory name (/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2/../../..) does not exist
ld: can't locate file for: -lg2c
make: *** [Hmisc.so] Error 1
ERROR: compilation failed for package 'Hmisc'
** Removing '/Library/Frameworks/R.framework/Versions/2.0.1/Resources/library/Hmisc'
** Restoring previous '/Library/Frameworks/R.framework/Versions/2.0.1/Resources/library/Hmisc'
On Feb 5, 2005, at 4:59 PM, Prof Brian Ripley wrote:
On Sat, 5 Feb 2005, Michael Kubovy wrote:
Frank Harrell suggested I re-post with information about the version of R
Thanks, that starts to make sense. You appear to have g77 installed, but not in the place the person who prepared the binary install of R has it.
Where do you have it installed? ('whereis g77' or 'which g77' should tell you.) Then you need to alter FLIBS in R_HOME/etc/Makeconf to point to it. (You can remove -lfrtbegin from FLIBS: it is not needed: your R_HOME looks to be /Library/Frameworks/R.framework/Versions/2.0.1.)
However, I believe there is a more fundamental problem: because libg2c is a static library on current MacOS X, most packages using Fortran cannot be compiled there. That's presumably the case with Hmisc, as the automated package builder is not providing a binary build. (There is supposedly a check directory on CRAN, but it is not there at present.)
Heres's the information:version_ platform powerpc-apple-darwin6.8 arch powerpc os darwin6.8 system powerpc, darwin6.8 status major 2 minor 0.1 year 2004 month 11 day 15 language R
Here's what happens when I try to install:install.packages("Hmisc")trying URL `http://cran.r-project.org/src/contrib/PACKAGES' Content type `text/plain; charset=iso-8859-1' length 47565 bytes opened URL ================================================== downloaded 46Kb
trying URL `http://cran.r-project.org/src/contrib/Hmisc_3.0-1.tar.gz' Content type `application/x-tar' length 453567 bytes opened URL ================================================== downloaded 442Kb
Delete downloaded files (y/N)?
The packages are in /tmp/Rtmp1911/Rinstdirfc4111 Warning message: Installation of package Hmisc had non-zero exit status in: install.packages("Hmisc")
Here's what the Console had to say:* Installing *source* package 'Hmisc' ... ** libs g77 -fno-common -g -O2 -c cidxcn.f -o cidxcn.o g77 -fno-common -g -O2 -c cidxcp.f -o cidxcp.o g77 -fno-common -g -O2 -c hoeffd.f -o hoeffd.o g77 -fno-common -g -O2 -c jacklins.f -o jacklins.o g77 -fno-common -g -O2 -c largrec.f -o largrec.o gcc -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c ranksort.c -o ranksort.o g77 -fno-common -g -O2 -c rcorr.f -o rcorr.o g77 -fno-common -g -O2 -c wclosest.f -o wclosest.o gcc -bundle -flat_namespace -undefined suppress -L/usr/local/lib -o Hmisc.so cidxcn.o cidxcp.o hoeffd.o jacklins.o largrec.o ranksort.o rcorr.o wclosest.o -L/usr/local/lib -L/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2 -L/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2/../../.. -lfrtbegin -lg2c -lSystem -lcc_dynamic -framework R ld: warning -L: directory name (/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2) does not exist ld: warning -L: directory name (/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2/../../..) does not exist ld: can't locate file for: -lfrtbegin make: *** [Hmisc.so] Error 1 ERROR: compilation failed for package 'Hmisc' ** Removing '/Library/Frameworks/R.framework/Versions/2.0.1/Resources/library/ Hmisc' ** Restoring previous '/Library/Frameworks/R.framework/Versions/2.0.1/Resources/library/ Hmisc'
_____________________________ Professor Michael Kubovy University of Virginia Department of Psychology USPS: P.O.Box 400400 Charlottesville, VA 22904-4400 Parcels: Room 102 Gilmer Hall McCormick Road Charlottesville, VA 22903 Office: B011 +1-434-982-4729 Lab: B019 +1-434-982-4751 Fax: +1-434-982-4766 WWW: http://www.people.virginia.edu/~mk9y/
-- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595
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