Hi Rav, if you have multiple cores on your CPU you can distribute the task among them, which really speeds it up. That might at least let you see whether it is a problem with the dataset.
grp <-find.clusters(app, max.n.clust=n, parallel = "multicore", ncpus = 4) You might need to install the Parallel package Cheers R. Graham Reynolds, Ph.D. Assistant Professor of Biology University of North Carolina Asheville www.caribbeanboas.org *From:* R-sig-genetics <[email protected]> on behalf of Bhuller, Ravneet <[email protected]> > *Sent:* Wednesday, August 31, 2016 5:39 AM > *To:* [email protected] > *Subject:* [R-sig-genetics] Query regarding DAPC using ADEGENT in R > > Dear All, > > I am trying to do DAPC on my genind object (app) using ADEGENET in R. But > when I run the following command: > > grp <- find.clusters(app) > > it is processing continuously for more than 2 hours but not producing any > output. Any guidance will be very much appreciated. > > Regards, > > Rav > > [[alternative HTML version deleted]] > > _______________________________________________ > R-sig-genetics mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/r-sig-genetics > R-sig-genetics Info Page - stat.ethz.ch > <https://stat.ethz.ch/mailman/listinfo/r-sig-genetics> > stat.ethz.ch > The R-sig-genetics mailing list is devoted to friendly, insightful, > exciting discussions on genetic data analysis using the R software. Covered > topics include: > > [[alternative HTML version deleted]] _______________________________________________ R-sig-genetics mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-genetics
