Hi, what is the size of the dataset? Are you sure it did not display a graph of cumulative variance and waits for your input? As you specified it, the function is interactive and will wait on your input before giving results.
Best Thibaut -- Dr Thibaut Jombart Lecturer, Department of Infectious Disease Epidemiology Imperial College London https://sites.google.com/site/thibautjombart/ https://github.com/thibautjombart Twitter: @TeebzR <https://twitter.com/TeebzR> On 1 September 2016 at 00:33, Graham Reynolds <[email protected]> wrote: > Hi Rav, if you have multiple cores on your CPU you can distribute the task > among them, which really speeds it up. That might at least let you see > whether it is a problem with the dataset. > > grp <-find.clusters(app, max.n.clust=n, parallel = "multicore", ncpus = 4) > > You might need to install the Parallel package > > Cheers > > > R. Graham Reynolds, Ph.D. > Assistant Professor of Biology > University of North Carolina Asheville > www.caribbeanboas.org > > > > *From:* R-sig-genetics <[email protected]> on behalf of > Bhuller, Ravneet <[email protected]> > > > *Sent:* Wednesday, August 31, 2016 5:39 AM > > *To:* [email protected] > > *Subject:* [R-sig-genetics] Query regarding DAPC using ADEGENT in R > > > > Dear All, > > > > I am trying to do DAPC on my genind object (app) using ADEGENET in R. But > > when I run the following command: > > > > grp <- find.clusters(app) > > > > it is processing continuously for more than 2 hours but not producing any > > output. Any guidance will be very much appreciated. > > > > Regards, > > > > Rav > > > > [[alternative HTML version deleted]] > > > > _______________________________________________ > > R-sig-genetics mailing list > > [email protected] > > https://stat.ethz.ch/mailman/listinfo/r-sig-genetics > > R-sig-genetics Info Page - stat.ethz.ch > > <https://stat.ethz.ch/mailman/listinfo/r-sig-genetics> > > stat.ethz.ch > > The R-sig-genetics mailing list is devoted to friendly, insightful, > > exciting discussions on genetic data analysis using the R software. > Covered > > topics include: > > > > > > [[alternative HTML version deleted]] > > _______________________________________________ > R-sig-genetics mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/r-sig-genetics > [[alternative HTML version deleted]] _______________________________________________ R-sig-genetics mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-genetics
