Dne pátek 9. prosince 2016 11:33:21 CET, Bhuller, Ravneet napsal(a): > Hello R-sig-genetics community members, > > I am using microsatellite data for the first time. It is in csv format. > Individual ids (1314 in total) are in the first column of the file (a > snapshot attached below) and the allelic information of each loci (17 loci) > is in duplicate columns. > [cid:[email protected]] > > When I convert this data.frame into genind object using adegent, it is > considering first column as a locus and calculates number of loci as 35 > (see below): [cid:[email protected]] > > Please if anyone can guide me what is going wrong here. The actual number of > loci is 17 and first column is not a locus.
Hi, it is well documented in the Adegent basics tutorial. Mine shortened version is in https://trapa.cz/en/course-molecular-data-r-2016 (see PDF attachment down the page from slide 42). HTH, V. -- Vojtěch Zeisek https://trapa.cz/en/ Department of Botany Faculty of Science, Charles University Benátská 433/2, Prague, 12801, CZ https://www.natur.cuni.cz/biology/botany/ Institute of Botany, Academy of Sciences Zámek 1, Průhonice, 25243, CZ http://www.ibot.cas.cz/en/ Czech Republic
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