Dear Thibaut and Vojtec, Everything is working fine now.
Many thanks for the great guidance. Rav > On 9 Dec 2016, at 11:50, Vojtěch Zeisek <[email protected]> wrote: > > Dne pátek 9. prosince 2016 11:33:21 CET, Bhuller, Ravneet napsal(a): >> Hello R-sig-genetics community members, >> >> I am using microsatellite data for the first time. It is in csv format. >> Individual ids (1314 in total) are in the first column of the file (a >> snapshot attached below) and the allelic information of each loci (17 loci) >> is in duplicate columns. >> [cid:[email protected]] >> >> When I convert this data.frame into genind object using adegent, it is >> considering first column as a locus and calculates number of loci as 35 >> (see below): [cid:[email protected]] >> >> Please if anyone can guide me what is going wrong here. The actual number of >> loci is 17 and first column is not a locus. > > Hi, > it is well documented in the Adegent basics tutorial. Mine shortened version > is in https://trapa.cz/en/course-molecular-data-r-2016 (see PDF attachment > down the page from slide 42). > HTH, > V. > > -- > Vojtěch Zeisek > https://trapa.cz/en/ > > Department of Botany > Faculty of Science, Charles University > Benátská 433/2, Prague, 12801, CZ > https://www.natur.cuni.cz/biology/botany/ > > Institute of Botany, Academy of Sciences > Zámek 1, Průhonice, 25243, CZ > http://www.ibot.cas.cz/en/ > > Czech Republic > _______________________________________________ > R-sig-genetics mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/r-sig-genetics _______________________________________________ R-sig-genetics mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-genetics
