Hi Simon, It worked a treat.
Many thanks, Noel Faux ---- NHMRC Post Doctoral Fellow Australian Imaging Biomarker Lifestyle (AIBL) flagship Mental Health Research Institute The University of Melbourne ---- 155 Oak St, Parkville Victoria 3052 Australia T: +613 9389 2943 ---- National Neuroscience Facility Level 3, Alan Gilbert Building 161 Barry Street, Carlton Victoria 3010 Australia T: +613 8344 1944 e-mail: [email protected] www.mhri.edu.au biocoder: http://biocoders.net/members/nfaux/ ---------------- This email and any attachments are confidential. They may contain legally privileged information or copyright material. You should not read, copy, use or disclose them without authorisation. If you are not an intended recipient, please contact us at once by return email and then delete both messages. We do not accept liability in connection with computer virus, data corruption, delay, interruption, unauthorised access or unauthorised amendment. This notice should not be removed. On 05/10/2011, at 3:31 AM, Simon Urbanek wrote: > > On Oct 3, 2011, at 11:44 PM, Noel Faux wrote: > >> Hi Simon, >> >> Thanks for the info. However, following the download links from the >> R-project home page, the only available binary on the Australian mirrors are >> R 2.13.1. Should I use http://r.research.att.com/R-2.13-branch-leopard.pkg? >> > > You can, but simply pick a more up-to-date mirror or the main CRAN site. FWIW > the master server for Mac releases is > http://r.research.att.com/bin/macosx > > Cheers, > Simon > > >> Cheers, >> Noel Faux >> --------- >> NHMRC Post Doctoral Fellow >> Australian Imaging Biomarker Lifestyle (AIBL) flagship >> Mental Health Research Institute >> --------- >> 155 Oak St, Parkville >> Victoria 3052 >> T: +613 9389 2943 >> --------- >> The University of Melbourne >> Level 3, Alan Gilbert Building >> 161 Barry Street, Carlton >> Victoria 3010 >> T: +613 8344 1944 >> ---------------- >> This email and any attachments are confidential. They may contain legally >> privileged information or copyright material. You should not read, copy, use >> or disclose them without authorisation. If you are not an intended >> recipient, please contact us at once by return email and then delete both >> messages. We do not accept liability in connection with computer virus, data >> corruption, delay, interruption, unauthorised access or unauthorised >> amendment. >> This notice should not be removed. >> >> >> >> >> >> >> >> On 04/10/2011, at 2:05 PM, Simon Urbanek wrote: >> >>> Noel, >>> >>> the package uses BLAS and your R is setup to build against vecLib BLAS >>> which has bad ID so anything linked against it will have trouble finding >>> libRblas. The simple fix is to switch to R BLAS instead of vecLib BLAS (see >>> R for Mac FAQ 12.5). Alternatively update to R 2.13.2, the issue has been >>> fixed in the CRAN binary distribution of R 2.13.2. >>> >>> Cheers, >>> Simon >>> >>> >>> On Oct 3, 2011, at 10:41 PM, Noel Faux wrote: >>> >>>> Hi all, >>>> >>>> I have an interesting issue specific to the Mac R.app, but not to the >>>> command line R or Rstudio. >>>> I have looked through the archive, however most of the threads seem to be >>>> for std packages, and further, most of what is said is a little beyond me, >>>> so any help with the problem below would be really appreciated. >>>> >>>> I have a locally developed library (libmlalgs), which I am able to install >>>> via the command line: >>>> sudo R64 CMD INSTALL libmlalgs >>>> In the >>>> /Library/Frameworks/R.framework/Versions/2.13/Resources/library/libmlalgs >>>> there is a .so file >>>> /Library/Frameworks/R.framework/Versions/2.13/Resources/library/libmlalgs/libs/x86_64/libmlalgs.so >>>> >>>> This runs and installs OK. >>>> I am able to run R64 in the command line and load the libmlalgs library >>>> fine :) >>>> I am able to use Rstudio and load the libmlalgs library fine. >>>> >>>> However, when using the R64.app and try and load the library within the >>>> GUI I am getting the following error: >>>> Error in dyn.load(file, DLLpath = DLLpath, ...) : >>>> unable to load shared object >>>> '/Library/Frameworks/R.framework/Versions/2.13/Resources/library/libmlalgs/libs/x86_64/libmlalgs.so': >>>> dlopen(/Library/Frameworks/R.framework/Versions/2.13/Resources/library/libmlalgs/libs/x86_64/libmlalgs.so, >>>> 6): Library not loaded: libRblas.dylib >>>> Referenced from: >>>> /Library/Frameworks/R.framework/Versions/2.13/Resources/library/libmlalgs/libs/x86_64/libmlalgs.so >>>> Reason: image not found >>>> Error in library(libmlalgs) : .First.lib failed for 'libmlalgs' >>>> >>>> I know the libmlalgs.so is in the right place and the permissions look OK: >>>> -rwxr-xr-x 1 root admin 58384 3 Oct 14:30 libmlalgs.so >>>> >>>> So I am stumped as to why the GUI is unable to read the file. >>>> >>>> Any pointers would very welcome. As I am a textmate user and it passes the >>>> code to the R64.app, I currently stuck with either command line or Rstudio >>>> (it's nice but is currently missing some key features textmate has) >>>> >>>> Specs: >>>> Running Mac OSX 10.7.1 >>>> R version 2.13.1 Patched (2011-08-14 r56741) >>>> Copyright (C) 2011 The R Foundation for Statistical Computing >>>> ISBN 3-900051-07-0 >>>> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) >>>> >>>> Many thanks, >>>> Noel Faux >>>> >>>> --------- >>>> NHMRC Post Doctoral Fellow >>>> Australian Imaging Biomarker Lifestyle (AIBL) flagship >>>> Mental Health Research Institute >>>> --------- >>>> 155 Oak St, Parkville >>>> Victoria 3052 >>>> T: +613 9389 2943 >>>> --------- >>>> The University of Melbourne >>>> Level 3, Alan Gilbert Building >>>> 161 Barry Street, Carlton >>>> Victoria 3010 >>>> T: +613 8344 1944 >>>> ---------------- >>>> This email and any attachments are confidential. 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