On 2011-10-11, at 23:30 , Simon Urbanek wrote:
>
> On Oct 11, 2011, at 5:16 PM, Marius Hofert wrote:
>
>>
>> On 2011-10-11, at 23:04 , Simon Urbanek wrote:
>>
>>>
>>> On Oct 11, 2011, at 4:10 PM, Marius Hofert wrote:
>>>
>>>> Dear all,
>>>>
>>>> I tried to install the package rgl on 10.7. Here's the output:
>>>>
>>>> ##############################################################################
>>>>
>>>>> install.packages("rgl", type="source")
>>>> install.packages("rgl", type="source")
>>>> Installing package(s) into ‘/Library/Frameworks/R.framework/library’
>>>> (as ‘lib’ is unspecified)
>>>> trying URL 'http://stat.ethz.ch/CRAN/src/contrib/rgl_0.92.798.tar.gz'
>>>> Content type 'application/x-gzip' length 1677772 bytes (1.6 Mb)
>>>> opened URL
>>>> ==================================================
>>>> downloaded 1.6 Mb
>>>>
>>>> * installing *source* package ‘rgl’ ...
>>>> checking for gcc... gcc -arch x86_64 -std=gnu99
>>>> checking for C compiler default output file name... a.out
>>>> checking whether the C compiler works... yes
>>>> checking whether we are cross compiling... no
>>>> checking for suffix of executables...
>>>> checking for suffix of object files... o
>>>> checking whether we are using the GNU C compiler... yes
>>>> checking whether gcc -arch x86_64 -std=gnu99 accepts -g... yes
>>>> checking for gcc -arch x86_64 -std=gnu99 option to accept ISO C89... none
>>>> needed
>>>> checking how to run the C preprocessor... gcc -arch x86_64 -std=gnu99 -E
>>>> checking for gcc... (cached) gcc -arch x86_64 -std=gnu99
>>>> checking whether we are using the GNU C compiler... (cached) yes
>>>> checking whether gcc -arch x86_64 -std=gnu99 accepts -g... (cached) yes
>>>> checking for gcc -arch x86_64 -std=gnu99 option to accept ISO C89...
>>>> (cached) none needed
>>>> checking for libpng-config... yes
>>>> configure: using libpng-config
>>>> configure: using libpng dynamic linkage
>>>> checking for X... libraries , headers
>>>> checking for glEnd in -lGL... no
>>>> configure: error: missing required library GL
>>>> ERROR: configuration failed for package ‘rgl’
>>>> * removing ‘/Library/Frameworks/R.framework/library/rgl’
>>>>
>>>> The downloaded packages are in
>>>>
>>>> ‘/private/var/folders/5r/fpc7qzk55ll71t9j8l9d1d_00000gn/T/RtmpQ6nuVK/downloaded_packages’
>>>> Warning message:
>>>> In install.packages("rgl", type = "source") :
>>>> installation of package 'rgl' had non-zero exit status
>>>>>
>>>>
>>>> ##############################################################################
>>>>
>>>> Apparently, I'm missing the "GL" library. But how can I install it? I
>>>> searched for it on the web and mainly found that the Mac should have Open
>>>> GL already installed (?).
>>>>
>>>
>>> Are you sure you installed X11 and Xcode4?
>>
>> yes, both are installed.
>>
>>> I have no problem with the *configuration* on vanilla Lion.
>>
>> I installed about 30 packages today, everything worked fine. Hmmm... seems
>> challenging to detect where the problem is.
>>
>
> If you want to do that, have a look at rgl/config.log - it will tell you what
> went wrong.
>
Hi Simon,
do you know the full path of this file? I can't find it.
>
>>> There is still an issue in the rgl 0.92.798 code (opengl.hpp), though, it's
>>> including AGL/* instead of OpenGL/* which fails (hence CC to Duncan), but
>>> that's at compilation stage, not configuration.
>>>
>>> BTW: why don't you just use
>>> install.packages("rgl")
>>> that works on Lion as well...
>>
>> I installed all packages from source since I installed R from source and I
>> remember reading somewhere that one should do it this way since the binaries
>> are built to work with CRAN's binary installation of R. But if this does not
>> create problems (please let me know), I'll give it a try.
>>
>
> As long as your configuration is compatible (essentially you have to set
> r_arch properly) it works. It's not guaranteed to work if you use different
> compilers.
I tried:
install.packages("rgl", configure.args="--r_arch=x86_64")
but the outcome was:
> install.packages("rgl", configure.args="--r_arch=x86_64")
install.packages("rgl", configure.args="--r_arch=x86_64")
Installing package(s) into ‘/Library/Frameworks/R.framework/library’
(as ‘lib’ is unspecified)
--- Please select a CRAN mirror for use in this session ---
Loading Tcl/Tk interface ... done
trying URL 'http://stat.ethz.ch/CRAN/src/contrib/rgl_0.92.798.tar.gz'
Content type 'application/x-gzip' length 1677772 bytes (1.6 Mb)
opened URL
==================================================
downloaded 1.6 Mb
* installing *source* package ‘rgl’ ...
configure: error: unrecognized option: `--r_arch=x86_64'
Try `./configure --help' for more information.
ERROR: configuration failed for package ‘rgl’
* removing ‘/Library/Frameworks/R.framework/library/rgl’
The downloaded packages are in
‘/private/var/folders/5r/fpc7qzk55ll71t9j8l9d1d_00000gn/T/RtmpzmXkSd/downloaded_packages’
Warning message:
In install.packages("rgl", configure.args = "--r_arch=x86_64") :
installation of package 'rgl' had non-zero exit status
>
How/Where should r_arch be specified?
Cheers,
Marius
>
>
>> I just remember something: I installed the 64bit R version. Is this a
>> problem for rgl?
>>
>
> No.
>
> Cheers,
> Simon
>
>
>> Cheers,
>>
>> Marius
>>
>>
>>>
>>> Cheers,
>>> Simon
>>>
>>>
>>> [PS: while at it - I'm a bit confused about the current setup, though,
>>> since it uses the (non-X11) OpenGL framework yet links X11; Also it
>>> crashes when GLX is not supported (e.g. ssh tunneling). I remember that at
>>> some point in the past it was building native and X11 versions but what is
>>> left is some mix of both...]
>>>
>>>
>>>
>>>
>>>
>>>> Cheers,
>>>>
>>>> Marius
>>>> _______________________________________________
>>>> R-SIG-Mac mailing list
>>>> [email protected]
>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>>>>
>>>>
>>>
>>
>>
>>
>
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