Dear Simon,
thanks a lot for helping. Here is what I could figure out:
(1) the installation of macports created the following line in .profile:
export PATH=/opt/local/bin:/opt/local/sbin:$PATH
(2) I'm sure I had other stuff in .profile -- apparently they got overwritten
by macports (seems nasty)
(3) (1) caused the opt-paths to appear in PATH
(4) I changed it to
export PATH=$PATH:/opt/local/bin:/opt/local/sbin
(5) then I executed:
R CMD INSTALL rgl
This gave:
localhost:Downloads mhofert$ R CMD INSTALL rgl
* installing to library ‘/Library/Frameworks/R.framework/library’
* installing *source* package ‘rgl’ ...
checking for gcc... gcc -arch x86_64 -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -arch x86_64 -std=gnu99 accepts -g... yes
checking for gcc -arch x86_64 -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -arch x86_64 -std=gnu99 -E
checking for gcc... (cached) gcc -arch x86_64 -std=gnu99
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc -arch x86_64 -std=gnu99 accepts -g... (cached) yes
checking for gcc -arch x86_64 -std=gnu99 option to accept ISO C89... (cached)
none needed
checking for libpng-config... yes
configure: using libpng-config
configure: using libpng dynamic linkage
checking for X... libraries , headers
checking for glEnd in -lGL... yes
checking for gluProject in -lGLU... yes
checking for freetype-config... yes
configure: using Freetype and FTGL
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - x86_64
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/X11/include/libpng15 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/X11/include/freetype2 -I/usr/X11/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c BBoxDeco.cpp -o BBoxDeco.o
In file included from RenderContext.hpp:9,
from BBoxDeco.hpp:14,
from BBoxDeco.cpp:1:
opengl.hpp:11:20: error: AGL/gl.h: No such file or directory
opengl.hpp:12:21: error: AGL/glu.h: No such file or directory
make: *** [BBoxDeco.o] Error 1
ERROR: compilation failed for package ‘rgl’
* removing ‘/Library/Frameworks/R.framework/library/rgl’
localhost:Downloads mhofert$
Do you know how to continue?
Cheers,
Marius
Here the config.log:
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by configure, which was
generated by GNU Autoconf 2.64. Invocation command line was
$ ./configure
## --------- ##
## Platform. ##
## --------- ##
hostname = localhost
uname -m = x86_64
uname -r = 11.0.1
uname -s = Darwin
uname -v = Darwin Kernel Version 11.0.1: Thu Jul 28 02:01:39 PDT 2011;
root:xnu-1699.23.4~1/RELEASE_X86_64
/usr/bin/uname -p = i386
/bin/uname -X = unknown
/bin/arch = unknown
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = Mach kernel version:
Darwin Kernel Version 11.0.1: Thu Jul 28 02:01:39 PDT 2011;
root:xnu-1699.23.4~1/RELEASE_X86_64
Kernel configured for up to 4 processors.
2 processors are physically available.
4 processors are logically available.
Processor type: i486 (Intel 80486)
Processors active: 0 1 2 3
Primary memory available: 4.00 gigabytes
Default processor set: 85 tasks, 363 threads, 4 processors
Load average: 0.66, Mach factor: 3.32
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown
PATH: /usr/bin
PATH: /bin
PATH: /usr/sbin
PATH: /sbin
PATH: /usr/local/bin
PATH: /usr/X11/bin
PATH: /usr/texbin
PATH: /opt/local/bin
PATH: /opt/local/sbin
## ----------- ##
## Core tests. ##
## ----------- ##
configure:2106: checking for gcc
configure:2133: result: gcc -arch x86_64 -std=gnu99
configure:2362: checking for C compiler version
configure:2371: gcc -arch x86_64 -std=gnu99 --version >&5
i686-apple-darwin11-llvm-gcc-4.2 (GCC) 4.2.1 (Based on Apple Inc. build 5658)
(LLVM build 2335.15.00)
Copyright (C) 2007 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
configure:2382: $? = 0
configure:2371: gcc -arch x86_64 -std=gnu99 -v >&5
Using built-in specs.
Target: i686-apple-darwin11
Configured with: /private/var/tmp/llvmgcc42/llvmgcc42-2335.15~25/src/configure
--disable-checking --enable-werror --prefix=/Developer/usr/llvm-gcc-4.2
--mandir=/share/man --enable-languages=c,objc,c++,obj-c++
--program-prefix=llvm- --program-transform-name=/^[cg][^.-]*$/s/$/-4.2/
--with-slibdir=/usr/lib --build=i686-apple-darwin11
--enable-llvm=/private/var/tmp/llvmgcc42/llvmgcc42-2335.15~25/dst-llvmCore/Developer/usr/local
--program-prefix=i686-apple-darwin11- --host=x86_64-apple-darwin11
--target=i686-apple-darwin11 --with-gxx-include-dir=/usr/include/c++/4.2.1
Thread model: posix
gcc version 4.2.1 (Based on Apple Inc. build 5658) (LLVM build 2335.15.00)
configure:2382: $? = 0
configure:2371: gcc -arch x86_64 -std=gnu99 -V >&5
llvm-gcc-4.2: argument to `-V' is missing
configure:2382: $? = 1
configure:2371: gcc -arch x86_64 -std=gnu99 -qversion >&5
i686-apple-darwin11-llvm-gcc-4.2: no input files
configure:2382: $? = 1
configure:2404: checking for C compiler default output file name
configure:2426: gcc -arch x86_64 -std=gnu99 -g -O2 conftest.c >&5
configure:2430: $? = 0
configure:2467: result: a.out
configure:2483: checking whether the C compiler works
configure:2492: ./a.out
configure:2496: $? = 0
configure:2511: result: yes
configure:2518: checking whether we are cross compiling
configure:2520: result: no
configure:2523: checking for suffix of executables
configure:2530: gcc -arch x86_64 -std=gnu99 -o conftest -g -O2 conftest.c >&5
configure:2534: $? = 0
configure:2556: result:
configure:2562: checking for suffix of object files
configure:2584: gcc -arch x86_64 -std=gnu99 -c -g -O2 conftest.c >&5
configure:2588: $? = 0
configure:2609: result: o
configure:2613: checking whether we are using the GNU C compiler
configure:2632: gcc -arch x86_64 -std=gnu99 -c -g -O2 conftest.c >&5
configure:2632: $? = 0
configure:2641: result: yes
configure:2650: checking whether gcc -arch x86_64 -std=gnu99 accepts -g
configure:2670: gcc -arch x86_64 -std=gnu99 -c -g conftest.c >&5
configure:2670: $? = 0
configure:2711: result: yes
configure:2728: checking for gcc -arch x86_64 -std=gnu99 option to accept ISO
C89
configure:2792: gcc -arch x86_64 -std=gnu99 -c -g -O2 conftest.c >&5
configure:2792: $? = 0
configure:2805: result: none needed
configure:2830: checking how to run the C preprocessor
configure:2900: result: gcc -arch x86_64 -std=gnu99 -E
configure:2920: gcc -arch x86_64 -std=gnu99 -E conftest.c
configure:2920: $? = 0
configure:2934: gcc -arch x86_64 -std=gnu99 -E conftest.c
conftest.c:9:28: error: ac_nonexistent.h: No such file or directory
configure:2934: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME ""
| #define PACKAGE_TARNAME ""
| #define PACKAGE_VERSION ""
| #define PACKAGE_STRING ""
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:3010: checking for gcc
configure:3037: result: gcc -arch x86_64 -std=gnu99
configure:3266: checking for C compiler version
configure:3275: gcc -arch x86_64 -std=gnu99 --version >&5
i686-apple-darwin11-llvm-gcc-4.2 (GCC) 4.2.1 (Based on Apple Inc. build 5658)
(LLVM build 2335.15.00)
Copyright (C) 2007 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
configure:3286: $? = 0
configure:3275: gcc -arch x86_64 -std=gnu99 -v >&5
Using built-in specs.
Target: i686-apple-darwin11
Configured with: /private/var/tmp/llvmgcc42/llvmgcc42-2335.15~25/src/configure
--disable-checking --enable-werror --prefix=/Developer/usr/llvm-gcc-4.2
--mandir=/share/man --enable-languages=c,objc,c++,obj-c++
--program-prefix=llvm- --program-transform-name=/^[cg][^.-]*$/s/$/-4.2/
--with-slibdir=/usr/lib --build=i686-apple-darwin11
--enable-llvm=/private/var/tmp/llvmgcc42/llvmgcc42-2335.15~25/dst-llvmCore/Developer/usr/local
--program-prefix=i686-apple-darwin11- --host=x86_64-apple-darwin11
--target=i686-apple-darwin11 --with-gxx-include-dir=/usr/include/c++/4.2.1
Thread model: posix
gcc version 4.2.1 (Based on Apple Inc. build 5658) (LLVM build 2335.15.00)
configure:3286: $? = 0
configure:3275: gcc -arch x86_64 -std=gnu99 -V >&5
llvm-gcc-4.2: argument to `-V' is missing
configure:3286: $? = 1
configure:3275: gcc -arch x86_64 -std=gnu99 -qversion >&5
i686-apple-darwin11-llvm-gcc-4.2: no input files
configure:3286: $? = 1
configure:3290: checking whether we are using the GNU C compiler
configure:3318: result: yes
configure:3327: checking whether gcc -arch x86_64 -std=gnu99 accepts -g
configure:3388: result: yes
configure:3405: checking for gcc -arch x86_64 -std=gnu99 option to accept ISO
C89
configure:3482: result: none needed
configure:3545: checking for libpng-config
configure:3561: found /usr/X11/bin/libpng-config
configure:3573: result: yes
configure:3584: using libpng-config
configure:3588: using libpng dynamic linkage
configure:3955: checking for X
configure:4063: gcc -arch x86_64 -std=gnu99 -E -DHAVE_PNG_H
-I/usr/X11/include/libpng15 conftest.c
configure:4063: $? = 0
configure:4094: gcc -arch x86_64 -std=gnu99 -o conftest -g -O2 -DHAVE_PNG_H
-I/usr/X11/include/libpng15 conftest.c -lX11 -L/usr/X11/lib -lpng15 >&5
configure:4094: $? = 0
configure:4144: result: libraries , headers
configure:4229: checking for glEnd in -lGL
configure:4254: gcc -arch x86_64 -std=gnu99 -o conftest -g -O2
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/X11/include/libpng15 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
conftest.c -lGL -framework OpenGL -dylib_file
/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
-L/usr/X11/lib -lpng15 -lX11 >&5
configure:4254: $? = 0
configure:4264: result: yes
configure:4291: checking for gluProject in -lGLU
configure:4316: gcc -arch x86_64 -std=gnu99 -o conftest -g -O2
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/X11/include/libpng15 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
conftest.c -lGLU -lGL -framework OpenGL -dylib_file
/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
-L/usr/X11/lib -lpng15 -lX11 >&5
configure:4316: $? = 0
configure:4326: result: yes
configure:4357: checking for freetype-config
configure:4373: found /usr/X11/bin/freetype-config
configure:4385: result: yes
configure:4398: using Freetype and FTGL
configure:4555: creating ./config.status
## ---------------------- ##
## Running config.status. ##
## ---------------------- ##
This file was extended by config.status, which was
generated by GNU Autoconf 2.64. Invocation command line was
CONFIG_FILES =
CONFIG_HEADERS =
CONFIG_LINKS =
CONFIG_COMMANDS =
$ ./config.status
on localhost
config.status:730: creating src/Makevars
## ---------------- ##
## Cache variables. ##
## ---------------- ##
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ac_cv_prog_ac_ct_CC='gcc -arch x86_64 -std=gnu99'
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
## ----------------- ##
## Output variables. ##
## ----------------- ##
AGLCPPFLAGS=' -DHAVE_FREETYPE -Iext/ftgl -I/usr/X11/include/freetype2
-I/usr/X11/include'
AGLLIBS=' -L/usr/X11/lib -lfreetype -lz'
BUILD_AGL_TRUE='#'
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CPP='gcc -arch x86_64 -std=gnu99 -E'
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CXXFLAGS='-g -O2'
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mandir='${datarootdir}/man'
oldincludedir='/usr/include'
pdfdir='${docdir}'
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program_transform_name='s,x,x,'
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sbindir='${exec_prefix}/sbin'
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## ----------- ##
## confdefs.h. ##
## ----------- ##
/* confdefs.h */
#define PACKAGE_NAME ""
#define PACKAGE_TARNAME ""
#define PACKAGE_VERSION ""
#define PACKAGE_STRING ""
#define PACKAGE_BUGREPORT ""
#define PACKAGE_URL ""
#define HAVE_LIBGL 1
#define HAVE_LIBGLU 1
configure: exit 0
On 2011-10-12, at 00:54 , Simon Urbanek wrote:
> The issue seem in your setup - you should be using libraries from
> /usr/X11/lib (which is the default) but you are using stuff from /opt/local
> which is incomplete. Make sure your /opt/.. paths are *last* on your PATH,
> definitely after /usr/X11/bin.
>
> Cheers,
> Simon
>
>
> On Oct 11, 2011, at 6:44 PM, Marius Hofert wrote:
>
>>
>> On 2011-10-12, at 00:37 , Simon Urbanek wrote:
>>
>>>
>>> On Oct 11, 2011, at 6:33 PM, Marius Hofert wrote:
>>>
>>>>
>>>> On 2011-10-12, at 00:12 , Simon Urbanek wrote:
>>>>
>>>>>
>>>>> On Oct 11, 2011, at 6:01 PM, Marius Hofert wrote:
>>>>>
>>>>>>
>>>>>> On 2011-10-11, at 23:30 , Simon Urbanek wrote:
>>>>>>
>>>>>>>
>>>>>>> On Oct 11, 2011, at 5:16 PM, Marius Hofert wrote:
>>>>>>>
>>>>>>>>
>>>>>>>> On 2011-10-11, at 23:04 , Simon Urbanek wrote:
>>>>>>>>
>>>>>>>>>
>>>>>>>>> On Oct 11, 2011, at 4:10 PM, Marius Hofert wrote:
>>>>>>>>>
>>>>>>>>>> Dear all,
>>>>>>>>>>
>>>>>>>>>> I tried to install the package rgl on 10.7. Here's the output:
>>>>>>>>>>
>>>>>>>>>> ##############################################################################
>>>>>>>>>>
>>>>>>>>>>> install.packages("rgl", type="source")
>>>>>>>>>> install.packages("rgl", type="source")
>>>>>>>>>> Installing package(s) into ‘/Library/Frameworks/R.framework/library’
>>>>>>>>>> (as ‘lib’ is unspecified)
>>>>>>>>>> trying URL 'http://stat.ethz.ch/CRAN/src/contrib/rgl_0.92.798.tar.gz'
>>>>>>>>>> Content type 'application/x-gzip' length 1677772 bytes (1.6 Mb)
>>>>>>>>>> opened URL
>>>>>>>>>> ==================================================
>>>>>>>>>> downloaded 1.6 Mb
>>>>>>>>>>
>>>>>>>>>> * installing *source* package ‘rgl’ ...
>>>>>>>>>> checking for gcc... gcc -arch x86_64 -std=gnu99
>>>>>>>>>> checking for C compiler default output file name... a.out
>>>>>>>>>> checking whether the C compiler works... yes
>>>>>>>>>> checking whether we are cross compiling... no
>>>>>>>>>> checking for suffix of executables...
>>>>>>>>>> checking for suffix of object files... o
>>>>>>>>>> checking whether we are using the GNU C compiler... yes
>>>>>>>>>> checking whether gcc -arch x86_64 -std=gnu99 accepts -g... yes
>>>>>>>>>> checking for gcc -arch x86_64 -std=gnu99 option to accept ISO C89...
>>>>>>>>>> none needed
>>>>>>>>>> checking how to run the C preprocessor... gcc -arch x86_64
>>>>>>>>>> -std=gnu99 -E
>>>>>>>>>> checking for gcc... (cached) gcc -arch x86_64 -std=gnu99
>>>>>>>>>> checking whether we are using the GNU C compiler... (cached) yes
>>>>>>>>>> checking whether gcc -arch x86_64 -std=gnu99 accepts -g... (cached)
>>>>>>>>>> yes
>>>>>>>>>> checking for gcc -arch x86_64 -std=gnu99 option to accept ISO C89...
>>>>>>>>>> (cached) none needed
>>>>>>>>>> checking for libpng-config... yes
>>>>>>>>>> configure: using libpng-config
>>>>>>>>>> configure: using libpng dynamic linkage
>>>>>>>>>> checking for X... libraries , headers
>>>>>>>>>> checking for glEnd in -lGL... no
>>>>>>>>>> configure: error: missing required library GL
>>>>>>>>>> ERROR: configuration failed for package ‘rgl’
>>>>>>>>>> * removing ‘/Library/Frameworks/R.framework/library/rgl’
>>>>>>>>>>
>>>>>>>>>> The downloaded packages are in
>>>>>>>>>>
>>>>>>>>>> ‘/private/var/folders/5r/fpc7qzk55ll71t9j8l9d1d_00000gn/T/RtmpQ6nuVK/downloaded_packages’
>>>>>>>>>> Warning message:
>>>>>>>>>> In install.packages("rgl", type = "source") :
>>>>>>>>>> installation of package 'rgl' had non-zero exit status
>>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> ##############################################################################
>>>>>>>>>>
>>>>>>>>>> Apparently, I'm missing the "GL" library. But how can I install it?
>>>>>>>>>> I searched for it on the web and mainly found that the Mac should
>>>>>>>>>> have Open GL already installed (?).
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>> Are you sure you installed X11 and Xcode4?
>>>>>>>>
>>>>>>>> yes, both are installed.
>>>>>>>>
>>>>>>>>> I have no problem with the *configuration* on vanilla Lion.
>>>>>>>>
>>>>>>>> I installed about 30 packages today, everything worked fine. Hmmm...
>>>>>>>> seems challenging to detect where the problem is.
>>>>>>>>
>>>>>>>
>>>>>>> If you want to do that, have a look at rgl/config.log - it will tell
>>>>>>> you what went wrong.
>>>>>>>
>>>>>>
>>>>>> Hi Simon,
>>>>>>
>>>>>> do you know the full path of this file? I can't find it.0
>>>>>>
>>>>>
>>>>> It's in the rgl directory after you run R CMD INSTALL rgl
>>>>
>>>> that's removed after the configure-trial:
>>>>
>>>> bash-3.2$ R CMD INSTALL rgl_0.92.798.tar.gz
>>>> * installing to library ‘/Library/Frameworks/R.framework/library’
>>>> * installing *source* package ‘rgl’ ...
>>>> checking for gcc... gcc -arch x86_64 -std=gnu99
>>>> checking for C compiler default output file name... a.out
>>>> checking whether the C compiler works... yes
>>>> checking whether we are cross compiling... no
>>>> checking for suffix of executables...
>>>> checking for suffix of object files... o
>>>> checking whether we are using the GNU C compiler... yes
>>>> checking whether gcc -arch x86_64 -std=gnu99 accepts -g... yes
>>>> checking for gcc -arch x86_64 -std=gnu99 option to accept ISO C89... none
>>>> needed
>>>> checking how to run the C preprocessor... gcc -arch x86_64 -std=gnu99 -E
>>>> checking for gcc... (cached) gcc -arch x86_64 -std=gnu99
>>>> checking whether we are using the GNU C compiler... (cached) yes
>>>> checking whether gcc -arch x86_64 -std=gnu99 accepts -g... (cached) yes
>>>> checking for gcc -arch x86_64 -std=gnu99 option to accept ISO C89...
>>>> (cached) none needed
>>>> checking for libpng-config... yes
>>>> configure: using libpng-config
>>>> configure: using libpng dynamic linkage
>>>> checking for X... libraries , headers
>>>> checking for glEnd in -lGL... no
>>>> configure: error: missing required library GL
>>>> ERROR: configuration failed for package ‘rgl’
>>>> * removing ‘/Library/Frameworks/R.framework/library/rgl’
>>>> bash-3.2$
>>>>
>>>> => there is no rgl folder (neither in
>>>> /Library/Frameworks/R.framework/library nor in the folder in which the
>>>> .tar.gz resides).
>>>>
>>>
>>> As I said use R CMD INSTALL rgl, not on the tar ball
>>> S
>>
>> Ahh, okay, now I get it :-)
>> Here's the config.log:
>>
>> This file contains any messages produced by compilers while
>> running configure, to aid debugging if configure makes a mistake.
>>
>> It was created by configure, which was
>> generated by GNU Autoconf 2.64. Invocation command line was
>>
>> $ ./configure
>>
>> ## --------- ##
>> ## Platform. ##
>> ## --------- ##
>>
>> hostname = 80-218-246-245.dclient.hispeed.ch
>> uname -m = x86_64
>> uname -r = 11.0.1
>> uname -s = Darwin
>> uname -v = Darwin Kernel Version 11.0.1: Thu Jul 28 02:01:39 PDT 2011;
>> root:xnu-1699.23.4~1/RELEASE_X86_64
>>
>> /usr/bin/uname -p = i386
>> /bin/uname -X = unknown
>>
>> /bin/arch = unknown
>> /usr/bin/arch -k = unknown
>> /usr/convex/getsysinfo = unknown
>> /usr/bin/hostinfo = Mach kernel version:
>> Darwin Kernel Version 11.0.1: Thu Jul 28 02:01:39 PDT 2011;
>> root:xnu-1699.23.4~1/RELEASE_X86_64
>> Kernel configured for up to 4 processors.
>> 2 processors are physically available.
>> 4 processors are logically available.
>> Processor type: i486 (Intel 80486)
>> Processors active: 0 1 2 3
>> Primary memory available: 4.00 gigabytes
>> Default processor set: 107 tasks, 499 threads, 4 processors
>> Load average: 0.91, Mach factor: 3.08
>> /bin/machine = unknown
>> /usr/bin/oslevel = unknown
>> /bin/universe = unknown
>>
>> PATH: /opt/local/bin
>> PATH: /opt/local/sbin
>> PATH: /usr/bin
>> PATH: /bin
>> PATH: /usr/sbin
>> PATH: /sbin
>> PATH: /usr/local/bin
>> PATH: /usr/X11/bin
>> PATH: /usr/texbin
>>
>>
>> ## ----------- ##
>> ## Core tests. ##
>> ## ----------- ##
>>
>> configure:2106: checking for gcc
>> configure:2133: result: gcc -arch x86_64 -std=gnu99
>> configure:2362: checking for C compiler version
>> configure:2371: gcc -arch x86_64 -std=gnu99 --version >&5
>> i686-apple-darwin11-llvm-gcc-4.2 (GCC) 4.2.1 (Based on Apple Inc. build
>> 5658) (LLVM build 2335.15.00)
>> Copyright (C) 2007 Free Software Foundation, Inc.
>> This is free software; see the source for copying conditions. There is NO
>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
>>
>> configure:2382: $? = 0
>> configure:2371: gcc -arch x86_64 -std=gnu99 -v >&5
>> Using built-in specs.
>> Target: i686-apple-darwin11
>> Configured with:
>> /private/var/tmp/llvmgcc42/llvmgcc42-2335.15~25/src/configure
>> --disable-checking --enable-werror --prefix=/Developer/usr/llvm-gcc-4.2
>> --mandir=/share/man --enable-languages=c,objc,c++,obj-c++
>> --program-prefix=llvm- --program-transform-name=/^[cg][^.-]*$/s/$/-4.2/
>> --with-slibdir=/usr/lib --build=i686-apple-darwin11
>> --enable-llvm=/private/var/tmp/llvmgcc42/llvmgcc42-2335.15~25/dst-llvmCore/Developer/usr/local
>> --program-prefix=i686-apple-darwin11- --host=x86_64-apple-darwin11
>> --target=i686-apple-darwin11 --with-gxx-include-dir=/usr/include/c++/4.2.1
>> Thread model: posix
>> gcc version 4.2.1 (Based on Apple Inc. build 5658) (LLVM build 2335.15.00)
>> configure:2382: $? = 0
>> configure:2371: gcc -arch x86_64 -std=gnu99 -V >&5
>> llvm-gcc-4.2: argument to `-V' is missing
>> configure:2382: $? = 1
>> configure:2371: gcc -arch x86_64 -std=gnu99 -qversion >&5
>> i686-apple-darwin11-llvm-gcc-4.2: no input files
>> configure:2382: $? = 1
>> configure:2404: checking for C compiler default output file name
>> configure:2426: gcc -arch x86_64 -std=gnu99 -g -O2 conftest.c >&5
>> configure:2430: $? = 0
>> configure:2467: result: a.out
>> configure:2483: checking whether the C compiler works
>> configure:2492: ./a.out
>> configure:2496: $? = 0
>> configure:2511: result: yes
>> configure:2518: checking whether we are cross compiling
>> configure:2520: result: no
>> configure:2523: checking for suffix of executables
>> configure:2530: gcc -arch x86_64 -std=gnu99 -o conftest -g -O2 conftest.c
>> >&5
>> configure:2534: $? = 0
>> configure:2556: result:
>> configure:2562: checking for suffix of object files
>> configure:2584: gcc -arch x86_64 -std=gnu99 -c -g -O2 conftest.c >&5
>> configure:2588: $? = 0
>> configure:2609: result: o
>> configure:2613: checking whether we are using the GNU C compiler
>> configure:2632: gcc -arch x86_64 -std=gnu99 -c -g -O2 conftest.c >&5
>> configure:2632: $? = 0
>> configure:2641: result: yes
>> configure:2650: checking whether gcc -arch x86_64 -std=gnu99 accepts -g
>> configure:2670: gcc -arch x86_64 -std=gnu99 -c -g conftest.c >&5
>> configure:2670: $? = 0
>> configure:2711: result: yes
>> configure:2728: checking for gcc -arch x86_64 -std=gnu99 option to accept
>> ISO C89
>> configure:2792: gcc -arch x86_64 -std=gnu99 -c -g -O2 conftest.c >&5
>> configure:2792: $? = 0
>> configure:2805: result: none needed
>> configure:2830: checking how to run the C preprocessor
>> configure:2900: result: gcc -arch x86_64 -std=gnu99 -E
>> configure:2920: gcc -arch x86_64 -std=gnu99 -E conftest.c
>> configure:2920: $? = 0
>> configure:2934: gcc -arch x86_64 -std=gnu99 -E conftest.c
>> conftest.c:9:28: error: ac_nonexistent.h: No such file or directory
>> configure:2934: $? = 1
>> configure: failed program was:
>> | /* confdefs.h */
>> | #define PACKAGE_NAME ""
>> | #define PACKAGE_TARNAME ""
>> | #define PACKAGE_VERSION ""
>> | #define PACKAGE_STRING ""
>> | #define PACKAGE_BUGREPORT ""
>> | #define PACKAGE_URL ""
>> | /* end confdefs.h. */
>> | #include <ac_nonexistent.h>
>> configure:3010: checking for gcc
>> configure:3037: result: gcc -arch x86_64 -std=gnu99
>> configure:3266: checking for C compiler version
>> configure:3275: gcc -arch x86_64 -std=gnu99 --version >&5
>> i686-apple-darwin11-llvm-gcc-4.2 (GCC) 4.2.1 (Based on Apple Inc. build
>> 5658) (LLVM build 2335.15.00)
>> Copyright (C) 2007 Free Software Foundation, Inc.
>> This is free software; see the source for copying conditions. There is NO
>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
>>
>> configure:3286: $? = 0
>> configure:3275: gcc -arch x86_64 -std=gnu99 -v >&5
>> Using built-in specs.
>> Target: i686-apple-darwin11
>> Configured with:
>> /private/var/tmp/llvmgcc42/llvmgcc42-2335.15~25/src/configure
>> --disable-checking --enable-werror --prefix=/Developer/usr/llvm-gcc-4.2
>> --mandir=/share/man --enable-languages=c,objc,c++,obj-c++
>> --program-prefix=llvm- --program-transform-name=/^[cg][^.-]*$/s/$/-4.2/
>> --with-slibdir=/usr/lib --build=i686-apple-darwin11
>> --enable-llvm=/private/var/tmp/llvmgcc42/llvmgcc42-2335.15~25/dst-llvmCore/Developer/usr/local
>> --program-prefix=i686-apple-darwin11- --host=x86_64-apple-darwin11
>> --target=i686-apple-darwin11 --with-gxx-include-dir=/usr/include/c++/4.2.1
>> Thread model: posix
>> gcc version 4.2.1 (Based on Apple Inc. build 5658) (LLVM build 2335.15.00)
>> configure:3286: $? = 0
>> configure:3275: gcc -arch x86_64 -std=gnu99 -V >&5
>> llvm-gcc-4.2: argument to `-V' is missing
>> configure:3286: $? = 1
>> configure:3275: gcc -arch x86_64 -std=gnu99 -qversion >&5
>> i686-apple-darwin11-llvm-gcc-4.2: no input files
>> configure:3286: $? = 1
>> configure:3290: checking whether we are using the GNU C compiler
>> configure:3318: result: yes
>> configure:3327: checking whether gcc -arch x86_64 -std=gnu99 accepts -g
>> configure:3388: result: yes
>> configure:3405: checking for gcc -arch x86_64 -std=gnu99 option to accept
>> ISO C89
>> configure:3482: result: none needed
>> configure:3545: checking for libpng-config
>> configure:3561: found /opt/local/bin/libpng-config
>> configure:3573: result: yes
>> configure:3584: using libpng-config
>> configure:3588: using libpng dynamic linkage
>> configure:3955: checking for X
>> configure:4063: gcc -arch x86_64 -std=gnu99 -E -DHAVE_PNG_H
>> -I/opt/local/include/libpng14 conftest.c
>> configure:4063: $? = 0
>> configure:4094: gcc -arch x86_64 -std=gnu99 -o conftest -g -O2 -DHAVE_PNG_H
>> -I/opt/local/include/libpng14 conftest.c -lX11 -L/opt/local/lib -lpng14 >&5
>> configure:4094: $? = 0
>> configure:4144: result: libraries , headers
>> configure:4229: checking for glEnd in -lGL
>> configure:4254: gcc -arch x86_64 -std=gnu99 -o conftest -g -O2
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
>> -I/opt/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
>> conftest.c -lGL -framework OpenGL -dylib_file
>> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
>> -L/opt/local/lib -lpng14 -lX11 >&5
>> ld: library not found for -lGL
>> collect2: ld returned 1 exit status
>> configure:4254: $? = 1
>> configure: failed program was:
>> | /* confdefs.h */
>> | #define PACKAGE_NAME ""
>> | #define PACKAGE_TARNAME ""
>> | #define PACKAGE_VERSION ""
>> | #define PACKAGE_STRING ""
>> | #define PACKAGE_BUGREPORT ""
>> | #define PACKAGE_URL ""
>> | /* end confdefs.h. */
>> |
>> | /* Override any GCC internal prototype to avoid an error.
>> | Use char because int might match the return type of a GCC
>> | builtin and then its argument prototype would still apply. */
>> | #ifdef __cplusplus
>> | extern "C"
>> | #endif
>> | char glEnd ();
>> | int
>> | main ()
>> | {
>> | return glEnd ();
>> | ;
>> | return 0;
>> | }
>> configure:4264: result: no
>> configure:4278: error: missing required library GL
>>
>> ## ---------------- ##
>> ## Cache variables. ##
>> ## ---------------- ##
>>
>> ac_cv_c_compiler_gnu=yes
>> ac_cv_env_CC_set=
>> ac_cv_env_CC_value=
>> ac_cv_env_CFLAGS_set=
>> ac_cv_env_CFLAGS_value=
>> ac_cv_env_CPPFLAGS_set=
>> ac_cv_env_CPPFLAGS_value=
>> ac_cv_env_CPP_set=
>> ac_cv_env_CPP_value=
>> ac_cv_env_LDFLAGS_set=
>> ac_cv_env_LDFLAGS_value=
>> ac_cv_env_LIBS_set=
>> ac_cv_env_LIBS_value=
>> ac_cv_env_XMKMF_set=
>> ac_cv_env_XMKMF_value=
>> ac_cv_env_build_alias_set=
>> ac_cv_env_build_alias_value=
>> ac_cv_env_host_alias_set=
>> ac_cv_env_host_alias_value=
>> ac_cv_env_target_alias_set=
>> ac_cv_env_target_alias_value=
>> ac_cv_have_x='have_x=yes ac_x_includes='\'''\'' ac_x_libraries='\'''\'''
>> ac_cv_lib_GL___glEnd=no
>> ac_cv_objext=o
>> ac_cv_prog_CPP='gcc -arch x86_64 -std=gnu99 -E'
>> ac_cv_prog_HAVE_LIBPNG_CONFIG=yes
>> ac_cv_prog_ac_ct_CC='gcc -arch x86_64 -std=gnu99'
>> ac_cv_prog_cc_c89=
>> ac_cv_prog_cc_g=yes
>>
>> ## ----------------- ##
>> ## Output variables. ##
>> ## ----------------- ##
>>
>> AGLCPPFLAGS=''
>> AGLLIBS=''
>> BUILD_AGL_TRUE='#'
>> CC='gcc -arch x86_64 -std=gnu99'
>> CFLAGS='-g -O2'
>> CPP='gcc -arch x86_64 -std=gnu99 -E'
>> CPPFLAGS='-I/System/Library/Frameworks/OpenGL.framework/Headers
>> -DHAVE_PNG_H -I/opt/local/include/libpng14 -DDarwin -DNO_GL_PREFIX
>> -I/usr/X11R6/include'
>> CXXFLAGS='-g -O2'
>> DEFS=''
>> ECHO_C='\c'
>> ECHO_N=''
>> ECHO_T=''
>> EGREP=''
>> EXEEXT=''
>> GREP=''
>> HAVE_FREETYPE_CONFIG=''
>> HAVE_LIBPNG_CONFIG='yes'
>> LDFLAGS=''
>> LIBOBJS=''
>> LIBS='-framework OpenGL -dylib_file
>> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
>> -L/opt/local/lib -lpng14 -lX11'
>> LTLIBOBJS=''
>> OBJEXT='o'
>> PACKAGE_BUGREPORT=''
>> PACKAGE_NAME=''
>> PACKAGE_STRING=''
>> PACKAGE_TARNAME=''
>> PACKAGE_URL=''
>> PACKAGE_VERSION=''
>> PATH_SEPARATOR=':'
>> SHELL='/bin/sh'
>> XMKMF=''
>> ac_ct_CC='gcc -arch x86_64 -std=gnu99'
>> bindir='${exec_prefix}/bin'
>> build_alias=''
>> datadir='${datarootdir}'
>> datarootdir='${prefix}/share'
>> docdir='${datarootdir}/doc/${PACKAGE}'
>> dvidir='${docdir}'
>> exec_prefix='NONE'
>> host_alias=''
>> htmldir='${docdir}'
>> includedir='${prefix}/include'
>> infodir='${datarootdir}/info'
>> libdir='${exec_prefix}/lib'
>> libexecdir='${exec_prefix}/libexec'
>> localedir='${datarootdir}/locale'
>> localstatedir='${prefix}/var'
>> mandir='${datarootdir}/man'
>> oldincludedir='/usr/include'
>> pdfdir='${docdir}'
>> prefix='NONE'
>> program_transform_name='s,x,x,'
>> psdir='${docdir}'
>> sbindir='${exec_prefix}/sbin'
>> sharedstatedir='${prefix}/com'
>> sysconfdir='${prefix}/etc'
>> target_alias=''
>>
>> ## ----------- ##
>> ## confdefs.h. ##
>> ## ----------- ##
>>
>> /* confdefs.h */
>> #define PACKAGE_NAME ""
>> #define PACKAGE_TARNAME ""
>> #define PACKAGE_VERSION ""
>> #define PACKAGE_STRING ""
>> #define PACKAGE_BUGREPORT ""
>> #define PACKAGE_URL ""
>>
>> configure: exit 1
>>
>>
>>
>>
>>>
>>>
>>>>>
>>>>>
>>>>>
>>>>>>>
>>>>>>>>> There is still an issue in the rgl 0.92.798 code (opengl.hpp),
>>>>>>>>> though, it's including AGL/* instead of OpenGL/* which fails (hence
>>>>>>>>> CC to Duncan), but that's at compilation stage, not configuration.
>>>>>>>>>
>>>>>>>>> BTW: why don't you just use
>>>>>>>>> install.packages("rgl")
>>>>>>>>> that works on Lion as well...
>>>>>>>>
>>>>>>>> I installed all packages from source since I installed R from source
>>>>>>>> and I remember reading somewhere that one should do it this way since
>>>>>>>> the binaries are built to work with CRAN's binary installation of R.
>>>>>>>> But if this does not create problems (please let me know), I'll give
>>>>>>>> it a try.
>>>>>>>>
>>>>>>>
>>>>>>> As long as your configuration is compatible (essentially you have to
>>>>>>> set r_arch properly) it works. It's not guaranteed to work if you use
>>>>>>> different compilers.
>>>>>>
>>>>>> I tried:
>>>>>> install.packages("rgl", configure.args="--r_arch=x86_64")
>>>>>>
>>>>>
>>>>> Naw, you got wrong - I was talking about R configuration. Never mind then
>>>>> (you may want to read up on building R - see the R for Mac FAQ).
>>>>>
>>>>> Cheers,
>>>>> Simon
>>>>>
>>>>>
>>>>>
>>>>>> but the outcome was:
>>>>>>
>>>>>>> install.packages("rgl", configure.args="--r_arch=x86_64")
>>>>>> install.packages("rgl", configure.args="--r_arch=x86_64")
>>>>>> Installing package(s) into ‘/Library/Frameworks/R.framework/library’
>>>>>> (as ‘lib’ is unspecified)
>>>>>> --- Please select a CRAN mirror for use in this session ---
>>>>>> Loading Tcl/Tk interface ... done
>>>>>> trying URL 'http://stat.ethz.ch/CRAN/src/contrib/rgl_0.92.798.tar.gz'
>>>>>> Content type 'application/x-gzip' length 1677772 bytes (1.6 Mb)
>>>>>> opened URL
>>>>>> ==================================================
>>>>>> downloaded 1.6 Mb
>>>>>>
>>>>>> * installing *source* package ‘rgl’ ...
>>>>>> configure: error: unrecognized option: `--r_arch=x86_64'
>>>>>> Try `./configure --help' for more information.
>>>>>> ERROR: configuration failed for package ‘rgl’
>>>>>> * removing ‘/Library/Frameworks/R.framework/library/rgl’
>>>>>>
>>>>>> The downloaded packages are in
>>>>>>
>>>>>> ‘/private/var/folders/5r/fpc7qzk55ll71t9j8l9d1d_00000gn/T/RtmpzmXkSd/downloaded_packages’
>>>>>> Warning message:
>>>>>> In install.packages("rgl", configure.args = "--r_arch=x86_64") :
>>>>>> installation of package 'rgl' had non-zero exit status
>>>>>>>
>>>>>>
>>>>>> How/Where should r_arch be specified?
>>>>>>
>>>>>> Cheers,
>>>>>>
>>>>>> Marius
>>>>>>
>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>> I just remember something: I installed the 64bit R version. Is this a
>>>>>>>> problem for rgl?
>>>>>>>>
>>>>>>>
>>>>>>> No.
>>>>>>>
>>>>>>> Cheers,
>>>>>>> Simon
>>>>>>>
>>>>>>>
>>>>>>>> Cheers,
>>>>>>>>
>>>>>>>> Marius
>>>>>>>>
>>>>>>>>
>>>>>>>>>
>>>>>>>>> Cheers,
>>>>>>>>> Simon
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> [PS: while at it - I'm a bit confused about the current setup,
>>>>>>>>> though, since it uses the (non-X11) OpenGL framework yet links X11;
>>>>>>>>> Also it crashes when GLX is not supported (e.g. ssh tunneling). I
>>>>>>>>> remember that at some point in the past it was building native and
>>>>>>>>> X11 versions but what is left is some mix of both...]
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>> Cheers,
>>>>>>>>>>
>>>>>>>>>> Marius
>>>>>>>>>> _______________________________________________
>>>>>>>>>> R-SIG-Mac mailing list
>>>>>>>>>> [email protected]
>>>>>>>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>
>>>>
>>>>
>>>>
>>>
>>
>>
>
ETH Zurich
Dr. Marius Hofert
RiskLab, Department of Mathematics
HG E 65.2
Rämistrasse 101
8092 Zurich
Switzerland
Phone +41 44 632 2423
[email protected]
http://www.math.ethz.ch/~hofertj
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