On Oct 11, 2011, at 6:33 PM, Marius Hofert wrote:
>
> On 2011-10-12, at 00:12 , Simon Urbanek wrote:
>
>>
>> On Oct 11, 2011, at 6:01 PM, Marius Hofert wrote:
>>
>>>
>>> On 2011-10-11, at 23:30 , Simon Urbanek wrote:
>>>
>>>>
>>>> On Oct 11, 2011, at 5:16 PM, Marius Hofert wrote:
>>>>
>>>>>
>>>>> On 2011-10-11, at 23:04 , Simon Urbanek wrote:
>>>>>
>>>>>>
>>>>>> On Oct 11, 2011, at 4:10 PM, Marius Hofert wrote:
>>>>>>
>>>>>>> Dear all,
>>>>>>>
>>>>>>> I tried to install the package rgl on 10.7. Here's the output:
>>>>>>>
>>>>>>> ##############################################################################
>>>>>>>
>>>>>>>> install.packages("rgl", type="source")
>>>>>>> install.packages("rgl", type="source")
>>>>>>> Installing package(s) into ‘/Library/Frameworks/R.framework/library’
>>>>>>> (as ‘lib’ is unspecified)
>>>>>>> trying URL 'http://stat.ethz.ch/CRAN/src/contrib/rgl_0.92.798.tar.gz'
>>>>>>> Content type 'application/x-gzip' length 1677772 bytes (1.6 Mb)
>>>>>>> opened URL
>>>>>>> ==================================================
>>>>>>> downloaded 1.6 Mb
>>>>>>>
>>>>>>> * installing *source* package ‘rgl’ ...
>>>>>>> checking for gcc... gcc -arch x86_64 -std=gnu99
>>>>>>> checking for C compiler default output file name... a.out
>>>>>>> checking whether the C compiler works... yes
>>>>>>> checking whether we are cross compiling... no
>>>>>>> checking for suffix of executables...
>>>>>>> checking for suffix of object files... o
>>>>>>> checking whether we are using the GNU C compiler... yes
>>>>>>> checking whether gcc -arch x86_64 -std=gnu99 accepts -g... yes
>>>>>>> checking for gcc -arch x86_64 -std=gnu99 option to accept ISO C89...
>>>>>>> none needed
>>>>>>> checking how to run the C preprocessor... gcc -arch x86_64 -std=gnu99 -E
>>>>>>> checking for gcc... (cached) gcc -arch x86_64 -std=gnu99
>>>>>>> checking whether we are using the GNU C compiler... (cached) yes
>>>>>>> checking whether gcc -arch x86_64 -std=gnu99 accepts -g... (cached) yes
>>>>>>> checking for gcc -arch x86_64 -std=gnu99 option to accept ISO C89...
>>>>>>> (cached) none needed
>>>>>>> checking for libpng-config... yes
>>>>>>> configure: using libpng-config
>>>>>>> configure: using libpng dynamic linkage
>>>>>>> checking for X... libraries , headers
>>>>>>> checking for glEnd in -lGL... no
>>>>>>> configure: error: missing required library GL
>>>>>>> ERROR: configuration failed for package ‘rgl’
>>>>>>> * removing ‘/Library/Frameworks/R.framework/library/rgl’
>>>>>>>
>>>>>>> The downloaded packages are in
>>>>>>>
>>>>>>> ‘/private/var/folders/5r/fpc7qzk55ll71t9j8l9d1d_00000gn/T/RtmpQ6nuVK/downloaded_packages’
>>>>>>> Warning message:
>>>>>>> In install.packages("rgl", type = "source") :
>>>>>>> installation of package 'rgl' had non-zero exit status
>>>>>>>>
>>>>>>>
>>>>>>> ##############################################################################
>>>>>>>
>>>>>>> Apparently, I'm missing the "GL" library. But how can I install it? I
>>>>>>> searched for it on the web and mainly found that the Mac should have
>>>>>>> Open GL already installed (?).
>>>>>>>
>>>>>>
>>>>>> Are you sure you installed X11 and Xcode4?
>>>>>
>>>>> yes, both are installed.
>>>>>
>>>>>> I have no problem with the *configuration* on vanilla Lion.
>>>>>
>>>>> I installed about 30 packages today, everything worked fine. Hmmm...
>>>>> seems challenging to detect where the problem is.
>>>>>
>>>>
>>>> If you want to do that, have a look at rgl/config.log - it will tell you
>>>> what went wrong.
>>>>
>>>
>>> Hi Simon,
>>>
>>> do you know the full path of this file? I can't find it.0
>>>
>>
>> It's in the rgl directory after you run R CMD INSTALL rgl
>
> that's removed after the configure-trial:
>
> bash-3.2$ R CMD INSTALL rgl_0.92.798.tar.gz
> * installing to library ‘/Library/Frameworks/R.framework/library’
> * installing *source* package ‘rgl’ ...
> checking for gcc... gcc -arch x86_64 -std=gnu99
> checking for C compiler default output file name... a.out
> checking whether the C compiler works... yes
> checking whether we are cross compiling... no
> checking for suffix of executables...
> checking for suffix of object files... o
> checking whether we are using the GNU C compiler... yes
> checking whether gcc -arch x86_64 -std=gnu99 accepts -g... yes
> checking for gcc -arch x86_64 -std=gnu99 option to accept ISO C89... none
> needed
> checking how to run the C preprocessor... gcc -arch x86_64 -std=gnu99 -E
> checking for gcc... (cached) gcc -arch x86_64 -std=gnu99
> checking whether we are using the GNU C compiler... (cached) yes
> checking whether gcc -arch x86_64 -std=gnu99 accepts -g... (cached) yes
> checking for gcc -arch x86_64 -std=gnu99 option to accept ISO C89... (cached)
> none needed
> checking for libpng-config... yes
> configure: using libpng-config
> configure: using libpng dynamic linkage
> checking for X... libraries , headers
> checking for glEnd in -lGL... no
> configure: error: missing required library GL
> ERROR: configuration failed for package ‘rgl’
> * removing ‘/Library/Frameworks/R.framework/library/rgl’
> bash-3.2$
>
> => there is no rgl folder (neither in /Library/Frameworks/R.framework/library
> nor in the folder in which the .tar.gz resides).
>
As I said use R CMD INSTALL rgl, not on the tar ball
S
>>
>>
>>
>>>>
>>>>>> There is still an issue in the rgl 0.92.798 code (opengl.hpp), though,
>>>>>> it's including AGL/* instead of OpenGL/* which fails (hence CC to
>>>>>> Duncan), but that's at compilation stage, not configuration.
>>>>>>
>>>>>> BTW: why don't you just use
>>>>>> install.packages("rgl")
>>>>>> that works on Lion as well...
>>>>>
>>>>> I installed all packages from source since I installed R from source and
>>>>> I remember reading somewhere that one should do it this way since the
>>>>> binaries are built to work with CRAN's binary installation of R. But if
>>>>> this does not create problems (please let me know), I'll give it a try.
>>>>>
>>>>
>>>> As long as your configuration is compatible (essentially you have to set
>>>> r_arch properly) it works. It's not guaranteed to work if you use
>>>> different compilers.
>>>
>>> I tried:
>>> install.packages("rgl", configure.args="--r_arch=x86_64")
>>>
>>
>> Naw, you got wrong - I was talking about R configuration. Never mind then
>> (you may want to read up on building R - see the R for Mac FAQ).
>>
>> Cheers,
>> Simon
>>
>>
>>
>>> but the outcome was:
>>>
>>>> install.packages("rgl", configure.args="--r_arch=x86_64")
>>> install.packages("rgl", configure.args="--r_arch=x86_64")
>>> Installing package(s) into ‘/Library/Frameworks/R.framework/library’
>>> (as ‘lib’ is unspecified)
>>> --- Please select a CRAN mirror for use in this session ---
>>> Loading Tcl/Tk interface ... done
>>> trying URL 'http://stat.ethz.ch/CRAN/src/contrib/rgl_0.92.798.tar.gz'
>>> Content type 'application/x-gzip' length 1677772 bytes (1.6 Mb)
>>> opened URL
>>> ==================================================
>>> downloaded 1.6 Mb
>>>
>>> * installing *source* package ‘rgl’ ...
>>> configure: error: unrecognized option: `--r_arch=x86_64'
>>> Try `./configure --help' for more information.
>>> ERROR: configuration failed for package ‘rgl’
>>> * removing ‘/Library/Frameworks/R.framework/library/rgl’
>>>
>>> The downloaded packages are in
>>>
>>> ‘/private/var/folders/5r/fpc7qzk55ll71t9j8l9d1d_00000gn/T/RtmpzmXkSd/downloaded_packages’
>>> Warning message:
>>> In install.packages("rgl", configure.args = "--r_arch=x86_64") :
>>> installation of package 'rgl' had non-zero exit status
>>>>
>>>
>>> How/Where should r_arch be specified?
>>>
>>> Cheers,
>>>
>>> Marius
>>>
>>>
>>>>
>>>>
>>>>> I just remember something: I installed the 64bit R version. Is this a
>>>>> problem for rgl?
>>>>>
>>>>
>>>> No.
>>>>
>>>> Cheers,
>>>> Simon
>>>>
>>>>
>>>>> Cheers,
>>>>>
>>>>> Marius
>>>>>
>>>>>
>>>>>>
>>>>>> Cheers,
>>>>>> Simon
>>>>>>
>>>>>>
>>>>>> [PS: while at it - I'm a bit confused about the current setup, though,
>>>>>> since it uses the (non-X11) OpenGL framework yet links X11; Also it
>>>>>> crashes when GLX is not supported (e.g. ssh tunneling). I remember that
>>>>>> at some point in the past it was building native and X11 versions but
>>>>>> what is left is some mix of both...]
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>> Cheers,
>>>>>>>
>>>>>>> Marius
>>>>>>> _______________________________________________
>>>>>>> R-SIG-Mac mailing list
>>>>>>> [email protected]
>>>>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>>>>>>>
>>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>>
>>>>
>>>
>>>
>>>
>>
>
>
>
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