On Sat, Nov 12, 2011 at 3:25 PM, Riccardo Romoli <[email protected]> wrote: > Hi, I have already installed R 2.14.0 and I have some problem to load > several packages, in particular xcms package. I installed it directly from > the GUI and when I try to load it the R I have: > >> library(xcms) > Error in dyn.load(file, DLLpath = DLLpath, ...) : > unable to load shared object > '/Users/riccardoromoli/Library/R/2.14/library/xcms/libs/x86_64/xcms.so': > dlopen(/Users/riccardoromoli/Library/R/2.14/library/xcms/libs/x86_64/xcms.so, > 6): Library not loaded: /usr/local/lib/libnetcdf.7.dylib > Referenced from: > /Users/riccardoromoli/Library/R/2.14/library/xcms/libs/x86_64/xcms.so > Reason: image not found > Inoltre: Warning message: > In library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = > lib.loc) : > there is no package called ‘digest’ > Errore: package/namespace load failed for ‘xcms’ >> > > I think the error is the absence of ibnetcdf.7.dylib. Do you have any idea > how can I correct this error?? >
xcms requires netcdf and zlib, these can be installed from here: http://www.unidata.ucar.edu/software/netcdf/ The recommended way to install Bioconductor packages is not from the GUI but as follows: source("http://bioconductor.org/biocLite.R";) biocLite("xcms") Dan > Best > > Riccardo > _______________________________________________ > R-SIG-Mac mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/r-sig-mac > _______________________________________________ R-SIG-Mac mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-mac
