Hi Riccardo, On Sun, Nov 13, 2011 at 1:30 PM, Riccardo Romoli <[email protected]> wrote: > > On 13/nov/11, at 02:52, Dan Tenenbaum wrote: > >> On Sat, Nov 12, 2011 at 3:25 PM, Riccardo Romoli <[email protected]> >> wrote: >>> >>> Hi, I have already installed R 2.14.0 and I have some problem to load >>> several packages, in particular xcms package. I installed it directly >>> from >>> the GUI and when I try to load it the R I have: >>> >>>> library(xcms) >>> >>> Error in dyn.load(file, DLLpath = DLLpath, ...) : >>> unable to load shared object >>> '/Users/riccardoromoli/Library/R/2.14/library/xcms/libs/x86_64/xcms.so': >>> >>> dlopen(/Users/riccardoromoli/Library/R/2.14/library/xcms/libs/x86_64/xcms.so, >>> 6): Library not loaded: /usr/local/lib/libnetcdf.7.dylib >>> Referenced from: >>> /Users/riccardoromoli/Library/R/2.14/library/xcms/libs/x86_64/xcms.so >>> Reason: image not found >>> Inoltre: Warning message: >>> In library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = >>> lib.loc) : >>> there is no package called ‘digest’ >>> Errore: package/namespace load failed for ‘xcms’ >>>> >>> >>> I think the error is the absence of ibnetcdf.7.dylib. Do you have any >>> idea >>> how can I correct this error?? >>> >> >> xcms requires netcdf and zlib, these can be installed from here: >> http://www.unidata.ucar.edu/software/netcdf/ >> >> The recommended way to install Bioconductor packages is not from the >> GUI but as follows: >> >> source("http://bioconductor.org/biocLite.R";) >> biocLite("xcms") >> >> Dan >> >> >>> Best >>> >>> Riccardo >>> _______________________________________________ >>> R-SIG-Mac mailing list >>> [email protected] >>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >>> > > Thanks Dan, > I will follow your suggestion, I will install netCDF but I have two further > question: > > 1)Following the instruction in the netCDF downloaded foldere I read: > > ./configure --prefix=/home/ed/local --disable-netcdf-4 > make check i > nstall > > What path(/home/ed/local ) should I set on osx??
Set it to /usr/local. > > 2)Why with the older version of R I haven't had no problem?? I'm not sure. I am cc'ing the package maintainer who can perhaps answer this question for you. Also, perhaps he can change the package so that as Brian suggests (here: https://stat.ethz.ch/pipermail/r-sig-mac/2011-November/008781.html), rather than looking for the netcdf libraries on a hardcoded path, he can do something like what is done in the CRAN package ncdf (see http://cran.fhcrc.org/web/packages/ncdf/INSTALL). Dan > > I there a way in osx to upadate R without to re-install all and not > installing the GUI app such as in linux?? > > Riccardo _______________________________________________ R-SIG-Mac mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-mac
