On Mon, Nov 14, 2011 at 6:54 PM, Riccardo Romoli <[email protected]> wrote: > Hello, I try to install netCDF using: > > ./configure --prefix=/usr/local/ --disable-netcdf-4 > make check install > > but the terminal say: configure: > > error: no acceptable C compiler found in $PATH > > I think I need to install the x developer code with the C compiler. It is > right?
Yes. > Best > > On 14/nov/11, at 18:57, Dan Tenenbaum wrote: > >> Hi Riccardo, >> >> On Sun, Nov 13, 2011 at 1:30 PM, Riccardo Romoli <[email protected]> >> wrote: >>> >>> On 13/nov/11, at 02:52, Dan Tenenbaum wrote: >>> >>>> On Sat, Nov 12, 2011 at 3:25 PM, Riccardo Romoli <[email protected]> >>>> wrote: >>>>> >>>>> Hi, I have already installed R 2.14.0 and I have some problem to load >>>>> several packages, in particular xcms package. I installed it directly >>>>> from >>>>> the GUI and when I try to load it the R I have: >>>>> >>>>>> library(xcms) >>>>> >>>>> Error in dyn.load(file, DLLpath = DLLpath, ...) : >>>>> unable to load shared object >>>>> >>>>> '/Users/riccardoromoli/Library/R/2.14/library/xcms/libs/x86_64/xcms.so': >>>>> >>>>> >>>>> dlopen(/Users/riccardoromoli/Library/R/2.14/library/xcms/libs/x86_64/xcms.so, >>>>> 6): Library not loaded: /usr/local/lib/libnetcdf.7.dylib >>>>> Referenced from: >>>>> /Users/riccardoromoli/Library/R/2.14/library/xcms/libs/x86_64/xcms.so >>>>> Reason: image not found >>>>> Inoltre: Warning message: >>>>> In library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = >>>>> lib.loc) : >>>>> there is no package called ‘digest’ >>>>> Errore: package/namespace load failed for ‘xcms’ >>>>>> >>>>> >>>>> I think the error is the absence of ibnetcdf.7.dylib. Do you have any >>>>> idea >>>>> how can I correct this error?? >>>>> >>>> >>>> xcms requires netcdf and zlib, these can be installed from here: >>>> http://www.unidata.ucar.edu/software/netcdf/ >>>> >>>> The recommended way to install Bioconductor packages is not from the >>>> GUI but as follows: >>>> >>>> source("http://bioconductor.org/biocLite.R";) >>>> biocLite("xcms") >>>> >>>> Dan >>>> >>>> >>>>> Best >>>>> >>>>> Riccardo >>>>> _______________________________________________ >>>>> R-SIG-Mac mailing list >>>>> [email protected] >>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >>>>> >>> >>> Thanks Dan, >>> I will follow your suggestion, I will install netCDF but I have two >>> further >>> question: >>> >>> 1)Following the instruction in the netCDF downloaded foldere I read: >>> >>> ./configure --prefix=/home/ed/local --disable-netcdf-4 >>> make check i >>> nstall >>> >>> What path(/home/ed/local ) should I set on osx?? >> >> Set it to /usr/local. >> >>> >>> 2)Why with the older version of R I haven't had no problem?? >> >> >> I'm not sure. I am cc'ing the package maintainer who can perhaps >> answer this question for you. Also, perhaps he can change the package >> so that as Brian suggests (here: >> https://stat.ethz.ch/pipermail/r-sig-mac/2011-November/008781.html), >> rather than looking for the netcdf libraries on a hardcoded path, he >> can do something like what is done in the CRAN package ncdf (see >> http://cran.fhcrc.org/web/packages/ncdf/INSTALL). >> >> Dan >> >> >>> >>> I there a way in osx to upadate R without to re-install all and not >>> installing the GUI app such as in linux?? >>> >>> Riccardo > > _______________________________________________ > R-SIG-Mac mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/r-sig-mac > _______________________________________________ R-SIG-Mac mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-mac
