On 29/10/2014 08:31, [email protected] wrote:
Hello
I am wondering if anyone else is having problems installing gstat in R
3.1.1 on yosemite (and also mavericks)?
I looked for similar problems on the web but found very little on this.
You need to do this at the OS command line and look at the log, but
something is wrong with your compiler installation.
If you upgraded to Yosemite, did you re-install the Xcode command-line
tools (which the upgrade is prone to partially remove)? See the manual:
http://cran.r-project.org/doc/manuals/r-patched/R-admin.html#OS-X .
If that has been done, try in a Terminal
curl -O http://cran.csiro.au/src/contrib/gstat_1.0-19.tar.gz
tar xf gstat_1.0-19.tar.gz
R CMD INSTALL gstat
and look at gstat/config.log . (This assumes you have the dependencies
installed, but that seems to be the case.)
Note to the gstat maintainer: you should not be checking for gcc. From
'Writing R Extensions'
CC=`"${R_HOME}/bin/R" CMD config CC`
CFLAGS=`"${R_HOME}/bin/R" CMD config CFLAGS`
CPPFLAGS=`"${R_HOME}/bin/R" CMD config CPPFLAGS`
should be added early in configure.in . OS X usually does have a 'gcc'
command, but it is really clang, and 'gcc' is not correct on other OSes.
sessionInfo and errors below.
HelpŠ. please?
Raphael.
sessionInfo()
R version 3.1.1 (2014-07-10)
Platform: x86_64-apple-darwin13.1.0 (64-bit)
locale:
[1] en_AU.UTF-8/en_AU.UTF-8/en_AU.UTF-8/C/en_AU.UTF-8/en_AU.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] tools_3.1.1
install.packages('gstat',type="source", repos='http://cran.csiro.au/')
Installing package into Œ/Users/vis010/Library/R/3.1/library¹
(as Œlib¹ is unspecified)
trying URL 'http://cran.csiro.au/src/contrib/gstat_1.0-19.tar.gz'
Content type 'application/x-gzip' length 2045717 bytes (2.0 Mb)
opened URL
==================================================
downloaded 2.0 Mb
* installing *source* package Œgstat¹ ...
** package Œgstat¹ successfully unpacked and MD5 sums checked
creating cache ./config.cache
checking for gcc... gcc
checking whether the C compiler (gcc ) works... no
configure: error: installation or configuration problem: C compiler cannot
create executables.
ERROR: configuration failed for package Œgstat¹
* removing Œ/Users/vis010/Library/R/3.1/library/gstat¹
* restoring previous Œ/Users/vis010/Library/R/3.1/library/gstat¹
The downloaded source packages are in
Œ/private/var/folders/zk/jzsww5w169g2zbl5hp260575y_7z7l/T/RtmpwsAqM6/downl
oaded_packages¹
Warning message:
In install.packages("gstat", type = "source", repos =
"http://cran.csiro.au/";) :
installation of package Œgstat¹ had non-zero exit status
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--
Brian D. Ripley, [email protected]
Emeritus Professor of Applied Statistics, University of Oxford
1 South Parks Road, Oxford OX1 3TG, UK
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