The function multiDiv in my package 'paleotree' plots the 95% quantile for a diversity curve / LTT as a gray shaded region, among other options. -Dave Bapst
On Tue, Apr 16, 2013 at 12:33 AM, Simon Greenhill <si...@simon.net.nz> wrote: > Hi all, > > Does anyone know of a good implementation of an LTT plot that can draw a > Confidence Interval or HPD interval from a set of trees? I've seen things > like `ltt` in phytools that can draw one line for each tree in the sample. > However, this can look a bit messy, and I'd ideally love to just plot the 95% > CI or HPD of the ages/lineages in the trees. Has anyone seen anything like > this? > > Many thanks, > > Simon > > _______________________________________________ > R-sig-phylo mailing list - R-sig-phylo@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-phylo > Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/ -- David Bapst Dept of Geophysical Sciences University of Chicago 5734 S. Ellis Chicago, IL 60637 http://home.uchicago.edu/~dwbapst/ http://cran.r-project.org/web/packages/paleotree/index.html _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
