r-sig-phylo
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Re: [R-sig-phylo] exponential time with write.tree
Jérémie Bardin
[R-sig-phylo] Link between Mahalanobis distance and PGLS
Guillaume LOUVEL
Re: [R-sig-phylo] Link between Mahalanobis distance and PGLS
Joe Felsenstein
[R-sig-phylo] Logarithmic Scales for Plotting Dated Phyogenies (e.g. Log of Time Axis?)
David Bapst
Re: [R-sig-phylo] Logarithmic Scales for Plotting Dated Phyogenies (e.g. Log of Time Axis?)
Bjørn Tore Kopperud
Re: [R-sig-phylo] Logarithmic Scales for Plotting Dated Phyogenies (e.g. Log of Time Axis?)
Emmanuel Paradis
Re: [R-sig-phylo] make.simmap -- strange posterior probability for root using ARD model?
Liam Revell
[R-sig-phylo] mixing trait values from distinct models of evolution to reconstruct null morphospace
françois RIGAL
Re: [R-sig-phylo] mixing trait values from distinct models of evolution to reconstruct null morphospace
David Bapst
Re: [R-sig-phylo] R-sig-phylo Digest, Vol 131, Issue 1
SMITH, MARTIN R.
[R-sig-phylo] ape chronos function returning pLL of -1E100
John S Denton
Re: [R-sig-phylo] ape chronos function returning pLL of -1E100
John S Denton
Re: [R-sig-phylo] ape chronos function returning pLL of -1E100
Emmanuel Paradis
[R-sig-phylo] OU for non-ultrametric trees
Danielle Miller
Re: [R-sig-phylo] OU for non-ultrametric trees
Brian O'Meara
Re: [R-sig-phylo] OU for non-ultrametric trees
David Bapst
Re: [R-sig-phylo] OU for non-ultrametric trees
Danielle Miller
Re: [R-sig-phylo] OU for non-ultrametric trees
Marguerite Butler
[R-sig-phylo] PhD projects using phylogenetic comparative methods
STREET, SALLY
[R-sig-phylo] aov.phylo vs phylANOVA
Jacob Berv
Re: [R-sig-phylo] aov.phylo vs phylANOVA
Theodore Garland
Re: [R-sig-phylo] aov.phylo vs phylANOVA
Liam J. Revell
Re: [R-sig-phylo] aov.phylo vs phylANOVA
Jacob Berv
Re: [R-sig-phylo] aov.phylo vs phylANOVA
Jacob Berv
[R-sig-phylo] Branch lengths in phytools::plot.cophylo
Vojtěch Zeisek
[R-sig-phylo] Branch lengths in phytools::plot.cophylo
Juan Antonio Balbuena
Re: [R-sig-phylo] Branch lengths in phytools::plot.cophylo
Liam Revell
Re: [R-sig-phylo] Branch lengths in phytools::plot.cophylo
Vojtěch Zeisek
Re: [R-sig-phylo] Branch lengths in phytools::plot.cophylo
Vojtěch Zeisek
[R-sig-phylo] Problem with make.simmap in Phytools
Kimberly Lynn Foster
Re: [R-sig-phylo] Problem with make.simmap in Phytools
Liam J. Revell
[R-sig-phylo] Extended Majority Consensus Topology (Allcompat Summary) in R? And some observations on ape's consensus() function
David Bapst
Re: [R-sig-phylo] Extended Majority Consensus Topology (Allcompat Summary) in R? And some observations on ape's consensus() function
Joe Felsenstein
Re: [R-sig-phylo] Extended Majority Consensus Topology (Allcompat Summary) in R? And some observations on ape's consensus() function
Emmanuel Paradis
[R-sig-phylo] Partitioning of functional beta diversity
' Salatiel Clemente
Re: [R-sig-phylo] Partitioning of functional beta diversity
françois RIGAL
[R-sig-phylo] No PCOA Correction Applied but Corrected Eigenvalues Returned? (ape::pcoa)
David Bapst
Re: [R-sig-phylo] No PCOA Correction Applied but Corrected Eigenvalues Returned? (ape::pcoa)
Emmanuel Paradis
Re: [R-sig-phylo] No PCOA Correction Applied but Corrected Eigenvalues Returned? (ape::pcoa)
David Bapst
Re: [R-sig-phylo] No PCOA Correction Applied but Corrected Eigenvalues Returned? (ape::pcoa)
Emmanuel Paradis
[R-sig-phylo] Phylogenetic comparative methods for studying diversification and phenotypic evolution
Oliver Hooker
[R-sig-phylo] Adding species to genera tree as polytomies
Liam Kendall
Re: [R-sig-phylo] Adding species to genera tree as polytomies
William Gearty
Re: [R-sig-phylo] Adding species to genera tree as polytomies
Liam J. Revell
Re: [R-sig-phylo] Adding species to genera tree as polytomies
Richard Grenyer
Re: [R-sig-phylo] Adding species to genera tree as polytomies
Eliot Miller
Re: [R-sig-phylo] Adding species to genera tree as polytomies
Liam Kendall
[R-sig-phylo] Book: Mixed and Phylogenetic Models: A Conceptual Introduction to Correlated Data
Anthony R. Ives
[R-sig-phylo] change colors in make.simmap
ramirez
Re: [R-sig-phylo] change colors in make.simmap
Gopal Murali
Re: [R-sig-phylo] change colors in make.simmap
Liam J. Revell
[R-sig-phylo] Building phlyogenies from DNA alignments
Zhong Huang
Re: [R-sig-phylo] Building phlyogenies from DNA alignments
Emmanuel Paradis
[R-sig-phylo] Estimating marginal ancestral states under a non-reversible model of evolution.
Jordan Gault
Re: [R-sig-phylo] Estimating marginal ancestral states under a non-reversible model of evolution.
Joe Felsenstein
Re: [R-sig-phylo] Estimating marginal ancestral states under a non-reversible model of evolution.
Jordan Gault
[R-sig-phylo] Issue with SIMMAP on 500 sampled Trees
Kimberly Lynn Foster
Re: [R-sig-phylo] Issue with SIMMAP on 500 sampled Trees
Liam J. Revell
[R-sig-phylo] PGLS on PCA axes?
Max Farrell
[R-sig-phylo] plot heatmap at nodes
Jacob Berv
Re: [R-sig-phylo] plot heatmap at nodes
Emmanuel Paradis
Re: [R-sig-phylo] plot heatmap at nodes
Emmanuel Paradis
Re: [R-sig-phylo] plot heatmap at nodes
Jacob Berv
[R-sig-phylo] plot heatmap at nodes
Juan Antonio Balbuena
[R-sig-phylo] understanding variance-covariance matrix
Agus Camacho
Re: [R-sig-phylo] understanding variance-covariance matrix
Brian O'Meara
Re: [R-sig-phylo] understanding variance-covariance matrix
Emmanuel Paradis
Re: [R-sig-phylo] understanding variance-covariance matrix
Andrew Hipp
Re: [R-sig-phylo] understanding variance-covariance matrix
Julien Clavel
Re: [R-sig-phylo] understanding variance-covariance matrix
Agus Camacho
Re: [R-sig-phylo] understanding variance-covariance matrix
Theodore Garland
[R-sig-phylo] Aligning tree tip labels together in ape
Carleson, Nick
Re: [R-sig-phylo] Aligning tree tip labels together in ape
Bjørn Tore Kopperud
Re: [R-sig-phylo] Aligning tree tip labels together in ape
Carleson, Nick
Re: [R-sig-phylo] Aligning tree tip labels together in ape
Liam J. Revell
Re: [R-sig-phylo] Aligning tree tip labels together in ape
Emmanuel Paradis
[R-sig-phylo] AGY coding
Karla Shikev
Re: [R-sig-phylo] AGY coding
Joseph Brown
Re: [R-sig-phylo] AGY coding
Karla Shikev
[R-sig-phylo] Question regarding log likelihood in OUCH package
Danielle Miller
Re: [R-sig-phylo] Question regarding log likelihood in OUCH package
Liam J. Revell
[R-sig-phylo] Problems with as.phylo.treeshape (library apTreeshape)
Matt Simenc
Re: [R-sig-phylo] R-sig-phylo Digest, Vol 127, Issue 4
roee maor
[R-sig-phylo] 3-category ordinal probit MCMCglmm model
Andrea Soriano
Re: [R-sig-phylo] 3-category ordinal probit MCMCglmm model
Theodore Garland
[R-sig-phylo] phylogenetic correction for multiple samples per species along an ecological gradient
Nicolay Cunha
Re: [R-sig-phylo] phylogenetic correction for multiple samples per species along an ecological gradient
Theodore Garland
Re: [R-sig-phylo] phylogenetic correction for multiple samples per species along an ecological gradient
f . krah
Re: [R-sig-phylo] phylogenetic correction for multiple samples per species along an ecological gradient
jonnations
Re: [R-sig-phylo] phylogenetic correction for multiple samples per species along an ecological gradient
Masahito Tsuboi
Re: [R-sig-phylo] phylogenetic correction for multiple samples per species along an ecological gradient
Nicolay Cunha
[R-sig-phylo] p-value in pgls.Ives
Iara Reinaldo Coriolano
[R-sig-phylo] p-value in pgls.Ives
Iara Reinaldo Coriolano
Re: [R-sig-phylo] p-value in pgls.Ives
Liam J. Revell
Re: [R-sig-phylo] p-value in pgls.Ives
Iara Reinaldo Coriolano
[R-sig-phylo] Simulating tree from a given tree
Miguel.Verdu
Re: [R-sig-phylo] Simulating tree from a given tree
Eduardo Ascarrunz
Re: [R-sig-phylo] Simulating tree from a given tree
Liam J. Revell
[R-sig-phylo] Measuring Phylogenetic Signal
Alyson Brokaw
Re: [R-sig-phylo] Measuring Phylogenetic Signal
Liam J. Revell
Re: [R-sig-phylo] Measuring Phylogenetic Signal
Theodore Garland
Re: [R-sig-phylo] Measuring Phylogenetic Signal
Manabu Sakamoto
Re: [R-sig-phylo] Measuring Phylogenetic Signal
Theodore Garland
Re: [R-sig-phylo] Measuring Phylogenetic Signal
David Bapst
[R-sig-phylo] keeping states discrete when plotting HiSSE results
Bonnie Blaimer
Re: [R-sig-phylo] keeping states discrete when plotting HiSSE results
Brian O'Meara
[R-sig-phylo] Bayou and surface Tree Plots
Sandro Sehner
[R-sig-phylo] ape-package: unknown states in ace analyses?
Théo Léger
Re: [R-sig-phylo] ape-package: unknown states in ace analyses?
Liam J. Revell
Re: [R-sig-phylo] ape-package: unknown states in ace analyses?
Jacob Berv
Re: [R-sig-phylo] ape-package: unknown states in ace analyses?
Emmanuel Paradis
Re: [R-sig-phylo] ape-package: unknown states in ace analyses?
Emmanuel Paradis
Re: [R-sig-phylo] ape-package: unknown states in ace analyses?
Théo Léger
[R-sig-phylo] Comparing DIC of phylogenetic and non-phylogenetic GLMM run with MCMC (MCMCglmm)
Liam Kendall
[R-sig-phylo] Comparing DIC of phylogenetic and non-phylogenetic GLMM run with MCMC (MCMCglmm)
jonnations
Re: [R-sig-phylo] Comparing DIC of phylogenetic and non-phylogenetic GLMM run with MCMC (MCMCglmm)
Jarrod Hadfield
Re: [R-sig-phylo] Comparing DIC of phylogenetic and non-phylogenetic GLMM run with MCMC (MCMCglmm)
Liam Kendall
[R-sig-phylo] diversification rates with two traits present simultaneously
Elizabeth Christina Miller
Re: [R-sig-phylo] diversification rates with two traits present simultaneously
William Gearty
Re: [R-sig-phylo] diversification rates with two traits present simultaneously
Gilles Benjamin Leduc
Re: [R-sig-phylo] diversification rates with two traits present simultaneously
Brian O'Meara
[R-sig-phylo] estimate ancestral state with OUwie models
Vilela de Moraes e Silva, Bruno
Re: [R-sig-phylo] estimate ancestral state with OUwie models
Diogo B. Provete
Re: [R-sig-phylo] estimate ancestral state with OUwie models
Lucas Jardim
Re: [R-sig-phylo] estimate ancestral state with OUwie models
David Bapst
Re: [R-sig-phylo] estimate ancestral state with OUwie models
Brian O'Meara
Re: [R-sig-phylo] estimate ancestral state with OUwie models
John Soghigian
Re: [R-sig-phylo] estimate ancestral state with OUwie models
Simone Blomberg
Re: [R-sig-phylo] estimate ancestral state with OUwie models
Marguerite Butler
Re: [R-sig-phylo] estimate ancestral state with OUwie models
Simone Blomberg
Re: [R-sig-phylo] estimate ancestral state with OUwie models
Thomas F Hansen
Re: [R-sig-phylo] estimate ancestral state with OUwie models
Joe Felsenstein
Re: [R-sig-phylo] estimate ancestral state with OUwie models
Nick Matzke
Re: [R-sig-phylo] estimate ancestral state with OUwie models
David Bapst
Re: [R-sig-phylo] estimate ancestral state with OUwie models
Jacob Berv
Re: [R-sig-phylo] estimate ancestral state with OUwie models
David Bapst
Re: [R-sig-phylo] estimate ancestral state with OUwie models
David Bapst
Re: [R-sig-phylo] estimate ancestral state with OUwie models
Cecile Ane
[R-sig-phylo] Testing tree disagreement: SH-test disappeared in ape-package
Sebastian Y . Müller
Re: [R-sig-phylo] Testing tree disagreement: SH-test disappeared in ape-package
Klaus Schliep
Re: [R-sig-phylo] Testing tree disagreement: SH-test disappeared in ape-package
Sebastian Y . Müller
Re: [R-sig-phylo] Testing tree disagreement: SH-test disappeared in ape-package
Emmanuel Paradis
[R-sig-phylo] remove phylogenetic signal from large dataset
fran?ois RIGAL
Re: [R-sig-phylo] remove phylogenetic signal from large dataset
Julien Clavel
Re: [R-sig-phylo] remove phylogenetic signal from large dataset
françois RIGAL
[R-sig-phylo] midpoint.root Error in phy$edge[, 2] : incorrect number of dimensions
Juan Antonio Balbuena
Re: [R-sig-phylo] midpoint.root Error in phy$edge[, 2] : incorrect number of dimensions
Liam J. Revell
Re: [R-sig-phylo] midpoint.root Error in phy$edge[, 2] : incorrect number of dimensions
Liam J. Revell
Re: [R-sig-phylo] midpoint.root Error in phy$edge[, 2] : incorrect number of dimensions
Juan Antonio Balbuena
Re: [R-sig-phylo] midpoint.root Error in phy$edge[, 2] : incorrect number of dimensions
Liam J. Revell
Re: [R-sig-phylo] midpoint.root Error in phy$edge[, 2] : incorrect number of dimensions
Juan Antonio Balbuena
[R-sig-phylo] is.binary() says "FALSE" after using multi2di()
Pedro Pequeno
Re: [R-sig-phylo] is.binary() says "FALSE" after using multi2di()
Graham Slater
Re: [R-sig-phylo] is.binary() says "FALSE" after using multi2di()
Liam J. Revell
Re: [R-sig-phylo] is.binary() says "FALSE" after using multi2di()
Pedro Pequeno
[R-sig-phylo] Postdoctoral position in R phylogenetics
Liam J. Revell
[R-sig-phylo] Problem with negative ages in OUwie.boot?
Rafael S Marcondes
Re: [R-sig-phylo] Problem with negative ages in OUwie.boot?
Rafael S Marcondes
Re: [R-sig-phylo] Problem with negative ages in OUwie.boot?
Eliot Miller
Re: [R-sig-phylo] Problem with negative ages in OUwie.boot?
David Bapst
Re: [R-sig-phylo] Problem with negative ages in OUwie.boot?
David Bapst
Re: [R-sig-phylo] Problem with negative ages in OUwie.boot?
Brian O'Meara
Re: [R-sig-phylo] Problem with negative ages in OUwie.boot?
David Bapst
Re: [R-sig-phylo] Problem with negative ages in OUwie.boot?
Liam J. Revell
Re: [R-sig-phylo] Problem with negative ages in OUwie.boot?
Theodore Garland
Re: [R-sig-phylo] Problem with negative ages in OUwie.boot?
Liam J. Revell
Re: [R-sig-phylo] Problem with negative ages in OUwie.boot?
Eliot Miller
Re: [R-sig-phylo] Problem with negative ages in OUwie.boot?
Rafael S Marcondes
Re: [R-sig-phylo] Problem with negative ages in OUwie.boot?
David Bapst
Re: [R-sig-phylo] Problem with negative ages in OUwie.boot?
Eliot Miller
[R-sig-phylo] Postdoc in PCM development in the Revell lab
Liam J. Revell
[R-sig-phylo] grafting chronograms onto backbone phylogeny
Chris Law
Re: [R-sig-phylo] grafting chronograms onto backbone phylogeny
Brian O'Meara
Re: [R-sig-phylo] grafting chronograms onto backbone phylogeny
Liam J. Revell
Re: [R-sig-phylo] grafting chronograms onto backbone phylogeny
Chris Law
[R-sig-phylo] Bounded Brownian model
Roi Holzman
Re: [R-sig-phylo] Bounded Brownian model
Florian Boucher
[R-sig-phylo] Reading ASTRAL trees into R
Tomas Fer
[R-sig-phylo] diversification rates
Lilian Sayuri Ouchi de Melo
Re: [R-sig-phylo] diversification rates
William Gearty
Re: [R-sig-phylo] diversification rates
Upham, Nathan
Re: [R-sig-phylo] diversification rates
Lilian Sayuri Ouchi de Melo
[R-sig-phylo] "Not of class phylo" error when lapply is used
jschenk
Re: [R-sig-phylo] "Not of class phylo" error when lapply is used
Liam J. Revell
Re: [R-sig-phylo] "Not of class phylo" error when lapply is used
jschenk
Re: [R-sig-phylo] "Not of class phylo" error when lapply is used
Jacob Berv
Re: [R-sig-phylo] "Not of class phylo" error when lapply is used
jschenk
Re: [R-sig-phylo] "Not of class phylo" error when lapply is used
Emmanuel Paradis
[R-sig-phylo] quantitative state dependent diversification of another quantitative trait (Zach Culumber)
krzysztofbartoszek
[R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models
Rafael S Marcondes
Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models
William Gearty
Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models
Rafael S Marcondes
Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models
Jacob Berv
Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models
Brian O'Meara
Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models
Brian O'Meara
Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models
Marguerite Butler
Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models
Masahito Tsuboi
Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models
Liam J. Revell
[R-sig-phylo] quantitative state dependent diversification of another quantitative trait
Zach Culumber
Re: [R-sig-phylo] quantitative state dependent diversification of another quantitative trait
Brian O'Meara
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