Hi Soren, Take a look at PhyloSim (http://bit.ly/psim-cran, http://bit.ly/phylosim), especially at chapter 2.6 (Simulating heterotachy) of the vignette ( http://bit.ly/psim-doc).
Regards, Botond On Tue, Aug 13, 2013 at 3:19 PM, Søren Faurby <[email protected]>wrote: > Hi All, > > I am trying to simulate sequence evolution where the underlying parameters > such as the Transition/Transversion Ratio and GC-content change over time > in each lineage for instance via Brownian motion (but other models may also > be acceptable). > > Can anyone point me to any codes capable of doing this within or outside R. > > Kind regards, > Søren Faurby > > [[alternative HTML version deleted]] > > > _______________________________________________ > R-sig-phylo mailing list - [email protected] > https://stat.ethz.ch/mailman/listinfo/r-sig-phylo > Searchable archive at > http://www.mail-archive.com/[email protected]/ > -- http://sbotond.github.com/ [[alternative HTML version deleted]]
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