Messages by Date
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2020/06/02
Re: [R-sig-phylo] collapsing sets of nodes based on label values
Joe Felsenstein
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2020/05/30
Re: [R-sig-phylo] R-sig-phylo Digest, Vol 148, Issue 7
nu35
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2020/05/30
Re: [R-sig-phylo] R-sig-phylo Digest, Vol 148, Issue 7
Susana Lopez
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2020/05/30
Re: [R-sig-phylo] R-sig-phylo Digest, Vol 148, Issue 7
Diogo B. Provete
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2020/05/29
[R-sig-phylo] DR metric of Jetz et al. 2012
Susana Lopez
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2020/05/23
[R-sig-phylo] MCMCglmm error (reduced animal model)
Sara Calhim
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2020/05/23
Re: [R-sig-phylo] collapsing sets of nodes based on label values
Martin Ramirez
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2020/05/22
Re: [R-sig-phylo] collapsing sets of nodes based on label values
Emmanuel Paradis
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2020/05/22
Re: [R-sig-phylo] collapsing sets of nodes based on label values
Brian O'Meara
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2020/05/22
[R-sig-phylo] collapsing sets of nodes based on label values
Karla Shikev
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2020/05/20
[R-sig-phylo] Linking external data to phylogeny, how to proceed with phylosignal package ?
Gabriel DUPRE
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2020/05/13
Re: [R-sig-phylo] Improves haplotype() function in pegas 0.13
Emmanuel Paradis
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2020/05/13
[R-sig-phylo] Improves haplotype() function in pegas 0.13
Jarrett Phillips
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2020/05/07
Re: [R-sig-phylo] R-sig-phylo Digest, Vol 148, Issue 1
jonnations
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2020/05/06
[R-sig-phylo] Combining foodwebs and phylogenetic trees
Charles Lehnen
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2020/04/14
Re: [R-sig-phylo] Alllowing and considering "missing data" as values for reconstruction of ancestral character states
Brian O'Meara
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2020/04/14
Re: [R-sig-phylo] Alllowing and considering "missing data" as values for reconstruction of ancestral character states
Carolina Santos Vieira
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2020/04/14
Re: [R-sig-phylo] Alllowing and considering "missing data" as values for reconstruction of ancestral character states
Liam J. Revell
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2020/04/13
Re: [R-sig-phylo] Alllowing and considering "missing data" as values for reconstruction of ancestral character states
Brian O'Meara
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2020/04/13
Re: [R-sig-phylo] Alllowing and considering "missing data" as values for reconstruction of ancestral character states
Carolina Santos Vieira
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2020/04/09
Re: [R-sig-phylo] ancestral state transitions clustered in time?
Brian O'Meara
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2020/04/09
[R-sig-phylo] ancestral state transitions clustered in time?
Elizabeth Miller
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2020/04/07
Re: [R-sig-phylo] Question on min(D.eig$values) in pcoa function of ape in R
Coline Boonman
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2020/04/06
Re: [R-sig-phylo] Question on min(D.eig$values) in pcoa function of ape in R
Emmanuel Paradis
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2020/04/06
Re: [R-sig-phylo] Question on min(D.eig$values) in pcoa function of ape in R
Coline Boonman
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2020/04/06
Re: [R-sig-phylo] Question on min(D.eig$values) in pcoa function of ape in R
Emmanuel Paradis
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2020/04/06
Re: [R-sig-phylo] Question on min(D.eig$values) in pcoa function of ape in R
Coline Boonman
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2020/04/04
Re: [R-sig-phylo] Not equally sized dataframes in convergence analysis in R
Tristan Stayton
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2020/04/04
[R-sig-phylo] Not equally sized dataframes in convergence analysis in R
Allison Luger
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2020/04/01
Re: [R-sig-phylo] Question on min(D.eig$values) in pcoa function of ape in R
Emmanuel Paradis
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2020/04/01
[R-sig-phylo] Question on min(D.eig$values) in pcoa function of ape in R
Coline Boonman
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2020/03/14
Re: [R-sig-phylo] BD process in Nee et al. (1994)
Emmanuel Paradis
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2020/03/14
[R-sig-phylo] BD process in Nee et al. (1994)
Karla Shikev
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2020/03/13
Re: [R-sig-phylo] Iterating though multiple FASTA files via rbind.DNAbin
Gustavo
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2020/03/12
Re: [R-sig-phylo] Iterating though multiple FASTA files via rbind.DNAbin
Emmanuel Paradis
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2020/03/12
Re: [R-sig-phylo] Iterating though multiple FASTA files via rbind.DNAbin
BRET R LARGET
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2020/03/12
[R-sig-phylo] How to create LTT plots in R
Ni Ni Win
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2020/03/12
Re: [R-sig-phylo] Iterating though multiple FASTA files via rbind.DNAbin
Liam J. Revell
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2020/03/12
[R-sig-phylo] Iterating though multiple FASTA files via rbind.DNAbin
Jarrett Phillips
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2020/03/04
Re: [R-sig-phylo] Multivariate ASR with Discrete Characters
Joe Felsenstein
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2020/03/04
Re: [R-sig-phylo] Multivariate ASR with Discrete Characters
William Gearty
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2020/03/04
Re: [R-sig-phylo] PEGAS: why did pegas not assign separate haplotype
Emmanuel Paradis
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2020/03/03
Re: [R-sig-phylo] Multivariate ASR with Discrete Characters
Donald Miles
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2020/03/03
Re: [R-sig-phylo] Multivariate ASR with Discrete Characters
Julien Clavel
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2020/03/03
[R-sig-phylo] Multivariate ASR with Discrete Characters
William Gearty
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2020/03/03
[R-sig-phylo] PEGAS: why did pegas not assign separate haplotype
Hirra Farooq
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2020/02/26
Re: [R-sig-phylo] PEGAS: assignment to haplotype when missing information
Emmanuel Paradis
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2020/02/26
Re: [R-sig-phylo] Alllowing and considering "missing data" as values for reconstruction of ancestral character states
Liam J. Revell
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2020/02/26
Re: [R-sig-phylo] PEGAS: assignment to haplotype when missing information
Emmanuel Paradis
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2020/02/25
[R-sig-phylo] PEGAS: assignment to haplotype when missing information
Hirra Farooq
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2020/02/21
Re: [R-sig-phylo] Alllowing and considering "missing data" as values for reconstruction of ancestral character states
Liam J. Revell
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2020/02/21
[R-sig-phylo] Alllowing and considering "missing data" as values for reconstruction of ancestral character states
Carolina Santos Vieira
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2020/02/14
[R-sig-phylo] Phylogenetic comparative study on the coevolution parasitoids and aphids
Isabella Capellini
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2020/01/24
[R-sig-phylo] 4 year pcm PhD opportunity
John Clarke
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2020/01/22
Re: [R-sig-phylo] pgls_different_pacakges_different_results
Jérémie Bardin
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2020/01/17
Re: [R-sig-phylo] pgls_different_pacakges_different_results
Liam Revell
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2020/01/17
Re: [R-sig-phylo] pgls_different_pacakges_different_results
Julien Clavel
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2020/01/17
[R-sig-phylo] pgls_different_pacakges_different_results
Jérémie Bardin
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2020/01/10
Re: [R-sig-phylo] extracting sister taxon pairs from phylo object in APE R package
Max Shpak
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2020/01/10
Re: [R-sig-phylo] extracting sister taxon pairs from phylo object in APE R package
Klaus Schliep
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2020/01/09
Re: [R-sig-phylo] extracting sister taxon pairs from phylo object in APE R package
Liam Revell
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2020/01/09
Re: [R-sig-phylo] extracting sister taxon pairs from phylo object in APE R package
Peter Cowman
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2020/01/09
[R-sig-phylo] extracting sister taxon pairs from phylo object in APE R package
Max Shpak
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2020/01/05
[R-sig-phylo] Postdoctoral Associate: morphometrics and phylogenetic comparative methods
Adams, Dean [EEOB]
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2019/12/17
[R-sig-phylo] Postdoc in R phylogenetics
Liam Revell
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2019/12/11
Re: [R-sig-phylo] p-value of PGLS models in caper
Rafael S Marcondes
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2019/12/10
Re: [R-sig-phylo] p-value of PGLS models in caper
William Gearty
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2019/12/10
[R-sig-phylo] p-value of PGLS models in caper
Rafael S Marcondes
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2019/12/08
[R-sig-phylo] COURSE - R 4 ALL (Andrew Beckerman & Dylan Childs) (R4LL01) FREE ACCOMMODATION AVAILABLE
Oliver Hooker
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2019/12/08
[R-sig-phylo] Stochastic differential equations with R school at Linkoping University, Sweden
krzysztofbartoszek
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2019/11/25
[R-sig-phylo] abundance-weighted Faith phylogenetic diversity index
Saleh Rahimlouye Barabi
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2019/11/25
[R-sig-phylo] Postdoc in computational phylogenetics
Liam Revell
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2019/11/20
[R-sig-phylo] Function
' Salatiel Clemente
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2019/11/07
Re: [R-sig-phylo] A test for valid phylo object (ape package) for package developers
Emmanuel Paradis
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2019/11/06
Re: [R-sig-phylo] Issue with APE drop.tip()
Emmanuel Paradis
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2019/11/05
Re: [R-sig-phylo] A test for valid phylo object (ape package) for package developers
Elizabeth Purdom
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2019/11/05
Re: [R-sig-phylo] A test for valid phylo object (ape package) for package developers
David Bapst
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2019/11/05
Re: [R-sig-phylo] A test for valid phylo object (ape package) for package developers
Liam Revell
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2019/11/05
[R-sig-phylo] A test for valid phylo object (ape package) for package developers
Elizabeth Purdom
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2019/10/25
[R-sig-phylo] Issue with APE drop.tip()
Liam Johnson
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2019/10/25
[R-sig-phylo] Phylogenetic D-statistics
Saleh Rahimlouye Barabi
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2019/10/12
Re: [R-sig-phylo] mixed phylogenetic model in MCMCglmm
HADFIELD Jarrod
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2019/10/12
Re: [R-sig-phylo] mixed phylogenetic model in MCMCglmm
Oscar Inostroza
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2019/10/12
Re: [R-sig-phylo] mixed phylogenetic model in MCMCglmm
HADFIELD Jarrod
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2019/10/12
Re: [R-sig-phylo] mixed phylogenetic model in MCMCglmm
Oscar Inostroza
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2019/10/11
Re: [R-sig-phylo] mixed phylogenetic model in MCMCglmm
HADFIELD Jarrod
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2019/10/11
[R-sig-phylo] mixed phylogenetic model in MCMCglmm
Oscar Inostroza
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2019/10/08
Re: [R-sig-phylo] PGLS-like model proportional data & zero inflation
jonnations
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2019/10/07
[R-sig-phylo] PGLS-like model proportional data & zero inflation
Daniel Kissling
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2019/10/01
[R-sig-phylo] pgls or pgee? differences in output.
carolina diller
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2019/09/30
Re: [R-sig-phylo] plotting time-calibrated trees
Saleh Rahimlouye Barabi
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2019/09/30
Re: [R-sig-phylo] plotting time-calibrated trees
Saleh Rahimlouye Barabi
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2019/09/30
[R-sig-phylo] molecular dating of a phylogenetic tree
Saleh Rahimlouye Barabi
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2019/09/30
Re: [R-sig-phylo] plotting time-calibrated trees
Liam Revell
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2019/09/30
[R-sig-phylo] plotting time-calibrated trees
Saleh Rahimlouye Barabi
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2019/09/27
Re: [R-sig-phylo] issue with add.species.to.genus
Karla Shikev
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2019/09/25
Re: [R-sig-phylo] issue with add.species.to.genus
Eliot Miller
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2019/09/24
[R-sig-phylo] issue with add.species.to.genus
Karla Shikev
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2019/09/20
Re: [R-sig-phylo] phytools - fitMk producing unexpected optimizations under custom models
Ivan Magalhaes
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2019/09/19
Re: [R-sig-phylo] phytools - fitMk producing unexpected optimizations under custom models
Ivan Magalhaes
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2019/09/18
Re: [R-sig-phylo] phytools - fitMk producing unexpected optimizations under custom models
Liam Revell
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2019/09/18
[R-sig-phylo] phytools - fitMk producing unexpected optimizations under custom models
Ivan Magalhaes
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2019/09/17
[R-sig-phylo] Phylogenetic Paleobiology Short Course at GSA 2019 - This Saturday in Phoenix, AZ - Sponsored by PaleoSoc
David Bapst
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2019/09/11
Re: [R-sig-phylo] Phylogenetic varying slopes and intercepts model
Brian O'Meara
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2019/09/10
Re: [R-sig-phylo] Phylogenetic varying slopes and intercepts model
Joe Felsenstein
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2019/09/10
[R-sig-phylo] Phylogenetic varying slopes and intercepts model
Oscar Inostroza
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2019/09/06
Re: [R-sig-phylo] Odd behavior of phylogenetic regressions
Cecile Ane
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2019/09/06
Re: [R-sig-phylo] Odd behavior of phylogenetic regressions
Søren Faurby
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2019/09/05
Re: [R-sig-phylo] model averaging using brownie.lite
krzysztofbartoszek
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2019/09/05
Re: [R-sig-phylo] model averaging using brownie.lite
Karla Shikev
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2019/09/05
Re: [R-sig-phylo] model averaging using brownie.lite
Cecile Ane
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2019/09/05
Re: [R-sig-phylo] model averaging using brownie.lite
Brian O'Meara
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2019/09/05
Re: [R-sig-phylo] model averaging using brownie.lite
Liam Revell
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2019/09/05
Re: [R-sig-phylo] model averaging using brownie.lite
Karla Shikev
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2019/09/05
Re: [R-sig-phylo] model averaging using brownie.lite
Liam Revell
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2019/09/05
[R-sig-phylo] model averaging using brownie.lite
Karla Shikev
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2019/09/03
Re: [R-sig-phylo] Number of parameters in BM and OU models in OUwie
Brian O'Meara
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2019/09/02
Re: [R-sig-phylo] Odd behavior of phylogenetic regressions
Cecile Ane
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2019/09/02
[R-sig-phylo] Odd behavior of phylogenetic regressions
Søren Faurby
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2019/08/27
[R-sig-phylo] Number of parameters in BM and OU models in OUwie
Rafael S Marcondes
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2019/08/14
[R-sig-phylo] Jaccard x Nestedness?
Alexandre F. Souza
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2019/08/13
[R-sig-phylo] Calculating marginal r-squared values from pgls
Anthony Geneva
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2019/08/09
Re: [R-sig-phylo] model averaging for discrete character evolution
Jacob Berv
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2019/08/09
[R-sig-phylo] R Package design and development and reproducible data science for biologists - FREE ACCOMMODATION
Oliver Hooker
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2019/08/08
Re: [R-sig-phylo] model averaging for discrete character evolution
Marguerite Butler
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2019/08/08
Re: [R-sig-phylo] Nantucket Phylogenetics DevelopeR Workshop
Johannes Björk
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2019/08/08
Re: [R-sig-phylo] model averaging for discrete character evolution
Jacob Berv
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2019/08/08
Re: [R-sig-phylo] Nantucket Phylogenetics DevelopeR Workshop
Joe Felsenstein
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2019/08/08
[R-sig-phylo] Nantucket Phylogenetics DevelopeR Workshop
Liam Revell
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2019/08/07
Re: [R-sig-phylo] model averaging for discrete character evolution
Liam Revell
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2019/08/07
Re: [R-sig-phylo] model averaging for discrete character evolution
Brian O'Meara
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2019/08/07
[R-sig-phylo] model averaging for discrete character evolution
Jacob Berv
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2019/08/06
Re: [R-sig-phylo] Recursive addition along a tree
Mario
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2019/08/05
Re: [R-sig-phylo] Recursive addition along a tree
Emmanuel Paradis
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2019/08/04
Re: [R-sig-phylo] Recursive addition along a tree
Liam Revell
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2019/08/04
Re: [R-sig-phylo] Recursive addition along a tree
Miguel Camacho
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2019/08/03
[R-sig-phylo] Recursive addition along a tree
Mario Schädel
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2019/07/21
Re: [R-sig-phylo] data violate assumptions of PGLS
William Gearty
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2019/07/20
Re: [R-sig-phylo] data violate assumptions of PGLS
Elizabeth Christina Miller
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2019/07/20
[R-sig-phylo] data violate assumptions of PGLS
Elizabeth Christina Miller
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2019/07/04
[R-sig-phylo] Bootstrapping loadings of phylo.pca
Diogo B. Provete
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2019/06/25
[R-sig-phylo] PhD using phylogenetic comparative methods
STREET, SALLY
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2019/06/20
[R-sig-phylo] Phangorn Midpoint root changing branch lengths
lavanya c
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2019/06/19
[R-sig-phylo] simulate a packed morphospace of landmark coordinates?
John S Denton
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2019/06/17
Re: [R-sig-phylo] cophylo
Liam Revell
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2019/06/17
Re: [R-sig-phylo] cophylo
Gian Maria Niccolò Benucci
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2019/06/17
Re: [R-sig-phylo] cophylo
Liam Revell
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2019/06/17
Re: [R-sig-phylo] cophylo
Juan Antonio Balbuena
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2019/06/17
[R-sig-phylo] cophylo
Saleh Rahimlouye Barabi
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2019/06/13
Re: [R-sig-phylo] comparePhylo
Emmanuel Paradis
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2019/06/13
Re: [R-sig-phylo] comparePhylo
William Gearty
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2019/06/13
[R-sig-phylo] comparePhylo
Saleh Rahimlouye Barabi
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2019/05/27
[R-sig-phylo] “plotRateThroughTime” in BAMM
andrea.meseguer
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2019/05/24
[R-sig-phylo] Analysing Environmental Adaptation Using Landscape Genomics in R (EDAP01)
Oliver Hooker
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2019/04/24
[R-sig-phylo] 2019 Paleo Society Short Course: Quant Methods in Phylogenetic Paleo - Sept 21st, 2019 - Phoenix, AZ
David Bapst
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2019/04/05
[R-sig-phylo] new PCM packages
krzysztofbartoszek
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2019/04/03
[R-sig-phylo] Special discount in upcoming Transmitting Science courses
Soledad De Esteban Trivigno
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2019/04/01
Re: [R-sig-phylo] using color function in phylomorphospace
AMANDA M SALVI
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2019/03/29
[R-sig-phylo] Open PhD position
krzysztofbartoszek
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2019/03/22
[R-sig-phylo] Help needed with dist.multiPhylo package distory
Juan Antonio Balbuena
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2019/03/22
[R-sig-phylo] Help needed with dist.multiPhylo package distory
Juan Antonio Balbuena
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2019/03/21
[R-sig-phylo] new package phylobench
Emmanuel Paradis
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2019/03/20
[R-sig-phylo] Introduction to GIS and spatial analysis with R (GISR01)
Oliver Hooker
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2019/03/09
Re: [R-sig-phylo] using color function in phylomorphospace
Liam Revell
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2019/03/09
Re: [R-sig-phylo] using color function in phylomorphospace
Cecile Ane
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2019/03/08
Re: [R-sig-phylo] using color function in phylomorphospace
Liam Revell
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2019/03/08
[R-sig-phylo] using color function in phylomorphospace
AMANDA M SALVI
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2019/02/26
[R-sig-phylo] R2 for phylogenetic mcmcglmm
SÉBASTIEN LAVERGNE
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2019/02/07
Re: [R-sig-phylo] patristic distance doubts and meanings
Bruno Garcia Luize
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2019/02/06
Re: [R-sig-phylo] patristic distance doubts and meanings
Brian O'Meara
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2019/02/06
Re: [R-sig-phylo] patristic distance doubts and meanings
Eliot Miller
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2019/02/05
[R-sig-phylo] rr2 does gls() {nlme}
Anthony R. Ives
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2019/02/05
[R-sig-phylo] treshML on a 200k taxa, 30 character matrix
Alexander Blanke
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2019/02/04
Re: [R-sig-phylo] patristic distance doubts and meanings
Bruno Garcia Luize
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2019/02/04
Re: [R-sig-phylo] patristic distance doubts and meanings
Liam Revell
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2019/02/04
[R-sig-phylo] patristic distance doubts and meanings
Bruno Garcia Luize
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2019/01/31
Re: [R-sig-phylo] Mesquite->ape node numbers and/or parsimony ancestral reconstruction
Brian O'Meara
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2019/01/31
Re: [R-sig-phylo] Mesquite->ape node numbers and/or parsimony ancestral reconstruction
Liam Revell
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2019/01/31
Re: [R-sig-phylo] Mesquite->ape node numbers and/or parsimony ancestral reconstruction
Roland Sookias
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2019/01/31
Re: [R-sig-phylo] Mesquite->ape node numbers and/or parsimony ancestral reconstruction
Liam Revell
-
2019/01/31
[R-sig-phylo] Mesquite->ape node numbers and/or parsimony ancestral reconstruction
Roland Sookias
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2019/01/31
[R-sig-phylo] Importing CD hit data to R
Gilles Benjamin Leduc
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2019/01/28
Re: [R-sig-phylo] Problem date consensus phylogeny
Alina van dijk
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2019/01/25
Re: [R-sig-phylo] Problem date consensus phylogeny
Liam Revell
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2019/01/25
Re: [R-sig-phylo] Problem date consensus phylogeny
Emmanuel Paradis
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2019/01/25
Re: [R-sig-phylo] Problem date consensus phylogeny
roee maor
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2019/01/24
Re: [R-sig-phylo] Problem date consensus phylogeny
Alina van dijk
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2019/01/23
Re: [R-sig-phylo] Problem date consensus phylogeny
Emmanuel Paradis
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2019/01/23
Re: [R-sig-phylo] Problem date consensus phylogeny
Joseph Brown
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2019/01/23
[R-sig-phylo] Problem date consensus phylogeny
Alina van dijk
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2019/01/23
Re: [R-sig-phylo] exponential time with write.tree
Jérémie Bardin
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2019/01/23
Re: [R-sig-phylo] exponential time with write.tree
Emmanuel Paradis
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2019/01/23
[R-sig-phylo] exponential time with write.tree
Jérémie Bardin
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2019/01/08
Re: [R-sig-phylo] Logarithmic Scales for Plotting Dated Phyogenies (e.g. Log of Time Axis?)
Emmanuel Paradis
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2019/01/04
Re: [R-sig-phylo] Link between Mahalanobis distance and PGLS
Joe Felsenstein
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2019/01/04
[R-sig-phylo] Link between Mahalanobis distance and PGLS
Guillaume LOUVEL
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2019/01/02
Re: [R-sig-phylo] Logarithmic Scales for Plotting Dated Phyogenies (e.g. Log of Time Axis?)
Bjørn Tore Kopperud
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2019/01/02
[R-sig-phylo] Logarithmic Scales for Plotting Dated Phyogenies (e.g. Log of Time Axis?)
David Bapst
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2018/12/21
Re: [R-sig-phylo] make.simmap -- strange posterior probability for root using ARD model?
Liam Revell
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2018/12/21
Re: [R-sig-phylo] mixing trait values from distinct models of evolution to reconstruct null morphospace
David Bapst