r-sig-phylo

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2021/05/28 Re: [R-sig-phylo] If my trait X cannot be regressed by body size, how can I rescue residuals corrected by the phylogeny and SE? Marguerite Butler
2021/05/27 Re: [R-sig-phylo] If my trait X cannot be regressed by body size, how can I rescue residuals corrected by the phylogeny and SE? Graham Slater
2021/05/27 Re: [R-sig-phylo] If my trait X cannot be regressed by body size, how can I rescue residuals corrected by the phylogeny and SE? Joe Felsenstein
2021/05/27 Re: [R-sig-phylo] If my trait X cannot be regressed by body size, how can I rescue residuals corrected by the phylogeny and SE? Gabriel Ferreira
2021/05/27 Re: [R-sig-phylo] If my trait X cannot be regressed by body size, how can I rescue residuals corrected by the phylogeny and SE? Joe Felsenstein
2021/05/27 Re: [R-sig-phylo] If my trait X cannot be regressed by body size, how can I rescue residuals corrected by the phylogeny and SE? Julien Clavel
2021/05/27 [R-sig-phylo] If my trait X cannot be regressed by body size, how can I rescue residuals corrected by the phylogeny and SE? Gabriel Ferreira
2021/05/21 Re: [R-sig-phylo] Phylogenetic network / ARG representation in ape Yan Wong
2021/05/21 Re: [R-sig-phylo] Phylogenetic network / ARG representation in ape Emmanuel Paradis
2021/05/20 Re: [R-sig-phylo] phylogenetic correction and MCMC model David Costantini
2021/05/20 Re: [R-sig-phylo] phylogenetic correction and MCMC model David Costantini
2021/05/20 Re: [R-sig-phylo] phylogenetic correction and MCMC model Jarrod Hadfield
2021/05/19 Re: [R-sig-phylo] phylogenetic correction and MCMC model David Costantini
2021/05/18 Re: [R-sig-phylo] Fitting models with continous characteres O'Meara, Brian C
2021/05/18 [R-sig-phylo] Phylogenetic network / ARG representation in ape Yan Wong
2021/05/18 Re: [R-sig-phylo] Error in Fitting OU Model in R Emmanuel Paradis
2021/05/17 Re: [R-sig-phylo] phylogenetic correction and MCMC model David Costantini
2021/05/17 Re: [R-sig-phylo] phylogenetic correction and MCMC model Jarrod Hadfield
2021/05/17 Re: [R-sig-phylo] phylogenetic correction and MCMC model David Costantini
2021/05/17 Re: [R-sig-phylo] phylogenetic correction and MCMC model Jarrod Hadfield
2021/05/17 Re: [R-sig-phylo] phylogenetic correction and MCMC model David Costantini
2021/05/17 Re: [R-sig-phylo] phylogenetic correction and MCMC model Jarrod Hadfield
2021/05/17 [R-sig-phylo] phylogenetic correction and MCMC model David Costantini
2021/05/17 Re: [R-sig-phylo] How to sort trait data according to tree Marguerite Butler
2021/05/16 Re: [R-sig-phylo] How to sort trait data according to tree Emmanuel Paradis
2021/05/16 Re: [R-sig-phylo] How to sort trait data according to tree Marguerite Butler
2021/05/16 Re: [R-sig-phylo] How to sort trait data according to tree Emmanuel Paradis
2021/05/16 [R-sig-phylo] Fitting models with continous characteres Simon Lobos
2021/05/16 Re: [R-sig-phylo] How to sort trait data according to tree Marguerite Butler
2021/05/15 Re: [R-sig-phylo] How to sort trait data according to tree Marguerite Butler
2021/05/15 [R-sig-phylo] How to sort trait data according to tree Oliver Betz
2021/05/13 Re: [R-sig-phylo] suspected error in hisse:::TransMatMakerMuHiSSE() roee maor
2021/05/13 [R-sig-phylo] Fwd: suspected error in hisse:::TransMatMakerMuHiSSE() Jeremy Michael Beaulieu
2021/05/13 Re: [R-sig-phylo] suspected error in hisse:::TransMatMakerMuHiSSE() roee maor
2021/05/12 [R-sig-phylo] suspected error in hisse:::TransMatMakerMuHiSSE() roee maor
2021/04/26 Re: [R-sig-phylo] Extract singleton haplotypes with pegas::haplotype() Emmanuel Paradis
2021/04/26 [R-sig-phylo] Extract singleton haplotypes with pegas::haplotype() Jarrett Phillips
2021/04/26 [R-sig-phylo] Are geiger:dtt p-values one-tailed? Roberto Marquez
2021/04/26 Re: [R-sig-phylo] ape: error in pcoa Juan Antonio Balbuena
2021/04/24 Re: [R-sig-phylo] ape: error in pcoa Emmanuel Paradis
2021/04/23 [R-sig-phylo] ape: error in pcoa Juan Antonio Balbuena
2021/04/22 Re: [R-sig-phylo] Number of parameters in Simmap Adrià Bellvert
2021/04/21 Re: [R-sig-phylo] Number of parameters in Simmap Alejandro Gonzalez Voyer
2021/04/21 [R-sig-phylo] Number of parameters in Simmap Adrià Bellvert
2021/04/14 Re: [R-sig-phylo] Testing between categories with species values in each one Julien Clavel
2021/04/12 Re: [R-sig-phylo] Testing between categories with species values in each one Juan Jose Lagos Oviedo
2021/04/09 Re: [R-sig-phylo] Testing between categories with species values in each one Julien Clavel
2021/04/09 [R-sig-phylo] Testing between categories with species values in each one Juan Jose Lagos Oviedo
2021/04/08 Re: [R-sig-phylo] Changing the color of text and nodes in arc.cladelabels in phytools Russell Engelman
2021/04/07 [R-sig-phylo] Moran's Eigenvector Maps Saleh Rahimlou
2021/04/06 [R-sig-phylo] phangorn Krzysztof Bartoszek
2021/04/06 Re: [R-sig-phylo] phangorn Klaus Schliep
2021/04/05 Re: [R-sig-phylo] Changing the color of text and nodes in arc.cladelabels in phytools Liam J. Revell
2021/04/05 [R-sig-phylo] Changing the color of text and nodes in arc.cladelabels in phytools Russell Engelman
2021/03/21 Re: [R-sig-phylo] units of sigsq Marguerite Butler
2021/03/19 Re: [R-sig-phylo] units of sigsq Joe Felsenstein
2021/03/19 Re: [R-sig-phylo] units of sigsq O'Meara, Brian C
2021/03/19 Re: [R-sig-phylo] units of sigsq Marguerite Butler
2021/03/19 Re: [R-sig-phylo] units of sigsq Joe Felsenstein
2021/03/19 Re: [R-sig-phylo] units of sigsq Theodore Garland
2021/03/19 Re: [R-sig-phylo] units of sigsq Joe Felsenstein
2021/03/19 Re: [R-sig-phylo] units of sigsq Karla Shikev
2021/03/19 Re: [R-sig-phylo] units of sigsq Florian Boucher
2021/03/19 [R-sig-phylo] units of sigsq Karla Shikev
2021/03/08 [R-sig-phylo] open PhD position Krzysztof Bartoszek
2021/03/04 Re: [R-sig-phylo] de Villemereuil et al. 2012 in R Karla Shikev
2021/03/03 Re: [R-sig-phylo] de Villemereuil et al. 2012 in R Simone Blomberg
2021/03/03 [R-sig-phylo] de Villemereuil et al. 2012 in R Karla Shikev
2021/02/18 Re: [R-sig-phylo] identifying phylogenetically equivalent nodes Eliot Miller
2021/02/18 Re: [R-sig-phylo] identifying phylogenetically equivalent nodes Emmanuel Paradis
2021/02/17 [R-sig-phylo] identifying phylogenetically equivalent nodes Jacob Berv
2021/01/29 Re: [R-sig-phylo] Nonsensical likelihoods returned when using the 'ace' function and the 'all rates different' model in the R package: 'Ape' Emmanuel Paradis
2021/01/28 [R-sig-phylo] Nonsensical likelihoods returned when using the 'ace' function and the 'all rates different' model in the R package: 'Ape' Joseph Keating
2021/01/27 [R-sig-phylo] ace function Saleh Rahimlou
2021/01/26 Re: [R-sig-phylo] Phylogenetic Signal in Internal Node Data Emmanuel Paradis
2021/01/26 Re: [R-sig-phylo] Phylogenetic Signal in Internal Node Data Theodore Garland
2021/01/26 [R-sig-phylo] Phylogenetic Signal in Internal Node Data Matthew Helmus
2021/01/21 [R-sig-phylo] phylogenetic distribution of a continuous trait Karla Shikev
2021/01/19 Re: [R-sig-phylo] Plotting phylogenetic tree Emmanuel Paradis
2021/01/19 [R-sig-phylo] Plotting phylogenetic tree Saleh Rahimlou
2021/01/03 Re: [R-sig-phylo] Error in corFactor when running gls to obtain lambda Emmanuel Paradis
2020/12/16 [R-sig-phylo] Error in corFactor when running gls to obtain lambda chris pestana
2020/12/03 Re: [R-sig-phylo] host ape source code on GitHub? Liam J. Revell
2020/12/03 [R-sig-phylo] host ape source code on GitHub? Nick Youngblut
2020/11/26 [R-sig-phylo] NERC PhD project: parental care evolution Isabella Capellini
2020/11/25 [R-sig-phylo] Fundamentals of populations genetics using R (FOPG01) Oliver Hooker
2020/11/25 [R-sig-phylo] Bayesian hierarchical modelling using R (IBHM05) Oliver Hooker
2020/11/18 Re: [R-sig-phylo] singularity with pgls and ordinal factor Ted Stankowich
2020/11/18 Re: [R-sig-phylo] singularity with pgls and ordinal factor Ted Stankowich
2020/11/18 Re: [R-sig-phylo] singularity with pgls and ordinal factor nu35
2020/11/18 Re: [R-sig-phylo] singularity with pgls and ordinal factor Ted Stankowich
2020/11/18 Re: [R-sig-phylo] singularity with pgls and ordinal factor Liam J. Revell
2020/11/18 [R-sig-phylo] singularity with pgls and ordinal factor Ted Stankowich
2020/10/27 [R-sig-phylo] Phylogenetically aligned component analysis Mike Collyer
2020/10/25 Re: [R-sig-phylo] error with bind.tree + ladderize Emmanuel Paradis
2020/10/22 [R-sig-phylo] error with bind.tree + ladderize Joseph Brown
2020/10/20 Re: [R-sig-phylo] Multi2di still not generating equiprobable trees Emmanuel Paradis
2020/10/19 [R-sig-phylo] Multi2di still not generating equiprobable trees Yan Wong
2020/09/24 Re: [R-sig-phylo] evolutionary rate for species with low phylogenetic signal Liam J. Revell
2020/09/24 Re: [R-sig-phylo] evolutionary rate for species with low phylogenetic signal Julien Clavel
2020/09/24 Re: [R-sig-phylo] evolutionary rate for species with low phylogenetic signal David Bapst
2020/09/23 Re: [R-sig-phylo] evolutionary rate for species with low phylogenetic signal Karla Shikev
2020/09/23 Re: [R-sig-phylo] evolutionary rate for species with low phylogenetic signal Liam J. Revell
2020/09/23 Re: [R-sig-phylo] evolutionary rate for species with low phylogenetic signal Karla Shikev
2020/09/23 Re: [R-sig-phylo] evolutionary rate for species with low phylogenetic signal Theodore Garland
2020/09/23 Re: [R-sig-phylo] evolutionary rate for species with low phylogenetic signal Liam J. Revell
2020/09/23 [R-sig-phylo] evolutionary rate for species with low phylogenetic signal Karla Shikev
2020/09/19 Re: [R-sig-phylo] ape package in R Emmanuel Paradis
2020/09/19 Re: [R-sig-phylo] ape package in R Salvador Espada Hinojosa
2020/09/19 [R-sig-phylo] ape package in R Ranjita Thapa
2020/09/18 Re: [R-sig-phylo] prop.clades in Ape package Liam J. Revell
2020/09/18 [R-sig-phylo] prop.clades in Ape package Sabrina Rossi
2020/08/26 Re: [R-sig-phylo] Problem - removing the extinct taxa from trees Elvira D`bastiani
2020/08/26 Re: [R-sig-phylo] Problem - removing the extinct taxa from trees Emmanuel Paradis
2020/08/25 Re: [R-sig-phylo] Problem - removing the extinct taxa from trees Elvira D`bastiani
2020/08/25 Re: [R-sig-phylo] Problem - removing the extinct taxa from trees Liam J. Revell
2020/08/25 Re: [R-sig-phylo] Problem - removing the extinct taxa from trees Elvira D`bastiani
2020/08/25 Re: [R-sig-phylo] Problem - removing the extinct taxa from trees Liam J. Revell
2020/08/25 [R-sig-phylo] Problem - removing the extinct taxa from trees Elvira D`bastiani
2020/08/04 [R-sig-phylo] ONLINE COURSE – Introduction to mixed models using R and Rstudio (IMMR02) Oliver Hooker
2020/07/20 Re: [R-sig-phylo] Rphylopars changing observed data values Julien Clavel
2020/07/20 Re: [R-sig-phylo] Rphylopars changing observed data values Liam J. Revell
2020/07/20 [R-sig-phylo] Introduction to generalised linear models using R and Rstudio (IGLM01) Oliver Hooker
2020/07/20 [R-sig-phylo] Rphylopars changing observed data values Nick Crouch
2020/07/19 [R-sig-phylo] bug in boot.phylo Emmanuel Paradis
2020/07/01 Re: [R-sig-phylo] Warning in ape::mst() in R 4.0 Emmanuel Paradis
2020/07/01 [R-sig-phylo] Warning in ape::mst() in R 4.0 Kelly Street
2020/07/01 [R-sig-phylo] Enumerating tree topologies Martin R. Smith
2020/06/29 Re: [R-sig-phylo] Breaking polytomies such that all topologies are equiprobable Emmanuel Paradis
2020/06/29 Re: [R-sig-phylo] Breaking polytomies such that all topologies are equiprobable Yan Wong
2020/06/28 Re: [R-sig-phylo] regression slopes Julien Clavel
2020/06/28 [R-sig-phylo] regression slopes Karla Shikev
2020/06/27 Re: [R-sig-phylo] Breaking polytomies such that all topologies are equiprobable Yan Wong
2020/06/27 Re: [R-sig-phylo] Breaking polytomies such that all topologies are equiprobable Emmanuel Paradis
2020/06/26 Re: [R-sig-phylo] Breaking polytomies such that all topologies are equiprobable Holder, Mark Travis
2020/06/26 [R-sig-phylo] Breaking polytomies such that all topologies are equiprobable Yan Wong
2020/06/22 [R-sig-phylo] MCMCglmm reduced animal model Sara Calhim
2020/06/12 Re: [R-sig-phylo] phyl.RMA error Ted Stankowich
2020/06/09 Re: [R-sig-phylo] phyl.RMA error Ted Stankowich
2020/06/09 Re: [R-sig-phylo] phyl.RMA error Theodore Garland
2020/06/09 Re: [R-sig-phylo] phyl.RMA error Ted Stankowich
2020/06/09 Re: [R-sig-phylo] phyl.RMA error Liam J. Revell
2020/06/09 [R-sig-phylo] phyl.RMA error Ted Stankowich
2020/06/02 Re: [R-sig-phylo] collapsing sets of nodes based on label values Joe Felsenstein
2020/05/30 Re: [R-sig-phylo] R-sig-phylo Digest, Vol 148, Issue 7 nu35
2020/05/30 Re: [R-sig-phylo] R-sig-phylo Digest, Vol 148, Issue 7 Susana Lopez
2020/05/30 Re: [R-sig-phylo] R-sig-phylo Digest, Vol 148, Issue 7 Diogo B. Provete
2020/05/29 [R-sig-phylo] DR metric of Jetz et al. 2012 Susana Lopez
2020/05/23 [R-sig-phylo] MCMCglmm error (reduced animal model) Sara Calhim
2020/05/23 Re: [R-sig-phylo] collapsing sets of nodes based on label values Martin Ramirez
2020/05/22 Re: [R-sig-phylo] collapsing sets of nodes based on label values Emmanuel Paradis
2020/05/22 Re: [R-sig-phylo] collapsing sets of nodes based on label values Brian O'Meara
2020/05/22 [R-sig-phylo] collapsing sets of nodes based on label values Karla Shikev
2020/05/20 [R-sig-phylo] Linking external data to phylogeny, how to proceed with phylosignal package ? Gabriel DUPRE
2020/05/13 Re: [R-sig-phylo] Improves haplotype() function in pegas 0.13 Emmanuel Paradis
2020/05/13 [R-sig-phylo] Improves haplotype() function in pegas 0.13 Jarrett Phillips
2020/05/07 Re: [R-sig-phylo] R-sig-phylo Digest, Vol 148, Issue 1 jonnations
2020/05/06 [R-sig-phylo] Combining foodwebs and phylogenetic trees Charles Lehnen
2020/04/14 Re: [R-sig-phylo] Alllowing and considering "missing data" as values for reconstruction of ancestral character states Brian O'Meara
2020/04/14 Re: [R-sig-phylo] Alllowing and considering "missing data" as values for reconstruction of ancestral character states Carolina Santos Vieira
2020/04/14 Re: [R-sig-phylo] Alllowing and considering "missing data" as values for reconstruction of ancestral character states Liam J. Revell
2020/04/13 Re: [R-sig-phylo] Alllowing and considering "missing data" as values for reconstruction of ancestral character states Brian O'Meara
2020/04/13 Re: [R-sig-phylo] Alllowing and considering "missing data" as values for reconstruction of ancestral character states Carolina Santos Vieira
2020/04/09 Re: [R-sig-phylo] ancestral state transitions clustered in time? Brian O'Meara
2020/04/09 [R-sig-phylo] ancestral state transitions clustered in time? Elizabeth Miller
2020/04/07 Re: [R-sig-phylo] Question on min(D.eig$values) in pcoa function of ape in R Coline Boonman
2020/04/06 Re: [R-sig-phylo] Question on min(D.eig$values) in pcoa function of ape in R Emmanuel Paradis
2020/04/06 Re: [R-sig-phylo] Question on min(D.eig$values) in pcoa function of ape in R Coline Boonman
2020/04/06 Re: [R-sig-phylo] Question on min(D.eig$values) in pcoa function of ape in R Emmanuel Paradis
2020/04/06 Re: [R-sig-phylo] Question on min(D.eig$values) in pcoa function of ape in R Coline Boonman
2020/04/04 Re: [R-sig-phylo] Not equally sized dataframes in convergence analysis in R Tristan Stayton
2020/04/04 [R-sig-phylo] Not equally sized dataframes in convergence analysis in R Allison Luger
2020/04/01 Re: [R-sig-phylo] Question on min(D.eig$values) in pcoa function of ape in R Emmanuel Paradis
2020/04/01 [R-sig-phylo] Question on min(D.eig$values) in pcoa function of ape in R Coline Boonman
2020/03/14 Re: [R-sig-phylo] BD process in Nee et al. (1994) Emmanuel Paradis
2020/03/14 [R-sig-phylo] BD process in Nee et al. (1994) Karla Shikev
2020/03/13 Re: [R-sig-phylo] Iterating though multiple FASTA files via rbind.DNAbin Gustavo
2020/03/12 Re: [R-sig-phylo] Iterating though multiple FASTA files via rbind.DNAbin Emmanuel Paradis
2020/03/12 Re: [R-sig-phylo] Iterating though multiple FASTA files via rbind.DNAbin BRET R LARGET
2020/03/12 [R-sig-phylo] How to create LTT plots in R Ni Ni Win
2020/03/12 Re: [R-sig-phylo] Iterating though multiple FASTA files via rbind.DNAbin Liam J. Revell
2020/03/12 [R-sig-phylo] Iterating though multiple FASTA files via rbind.DNAbin Jarrett Phillips
2020/03/04 Re: [R-sig-phylo] Multivariate ASR with Discrete Characters Joe Felsenstein
2020/03/04 Re: [R-sig-phylo] Multivariate ASR with Discrete Characters William Gearty
2020/03/04 Re: [R-sig-phylo] PEGAS: why did pegas not assign separate haplotype Emmanuel Paradis
2020/03/03 Re: [R-sig-phylo] Multivariate ASR with Discrete Characters Donald Miles
2020/03/03 Re: [R-sig-phylo] Multivariate ASR with Discrete Characters Julien Clavel
2020/03/03 [R-sig-phylo] Multivariate ASR with Discrete Characters William Gearty
2020/03/03 [R-sig-phylo] PEGAS: why did pegas not assign separate haplotype Hirra Farooq
2020/02/26 Re: [R-sig-phylo] PEGAS: assignment to haplotype when missing information Emmanuel Paradis
2020/02/26 Re: [R-sig-phylo] Alllowing and considering "missing data" as values for reconstruction of ancestral character states Liam J. Revell
2020/02/26 Re: [R-sig-phylo] PEGAS: assignment to haplotype when missing information Emmanuel Paradis
2020/02/25 [R-sig-phylo] PEGAS: assignment to haplotype when missing information Hirra Farooq
2020/02/21 Re: [R-sig-phylo] Alllowing and considering "missing data" as values for reconstruction of ancestral character states Liam J. Revell
2020/02/21 [R-sig-phylo] Alllowing and considering "missing data" as values for reconstruction of ancestral character states Carolina Santos Vieira
2020/02/14 [R-sig-phylo] Phylogenetic comparative study on the coevolution parasitoids and aphids Isabella Capellini
2020/01/24 [R-sig-phylo] 4 year pcm PhD opportunity John Clarke
2020/01/22 Re: [R-sig-phylo] pgls_different_pacakges_different_results Jérémie Bardin
2020/01/17 Re: [R-sig-phylo] pgls_different_pacakges_different_results Liam Revell
2020/01/17 Re: [R-sig-phylo] pgls_different_pacakges_different_results Julien Clavel