I've Rcpp-ified the new package bcp (Bayesian change point analysis) and it seems to work on Linux and Windows. We're having some Mac problems (and I don't have a Mac). I have one current and one past student, both getting similar problems in different ways. For one, she started with (I think) Rcpp installing properly, but the RESULT 1 bus error when trying to build bcp. I recommended she rebuild R from scratch using updated everyting; after doing so, she got a similar bus error RESULT 2, this time in the process of trying to install Rcpp. The other student has the same bus error.
I've exhausted my guesses and recommendations. I note the same bus error appears in some RcppModel logs, at https://r-forge.r-project.org/R/?group_id=155&log=build_mac&pkg=RcppModels&flavor=patched ?? Any advice ?? Jay RESULT 1: xiao-yangs-macbook:Week10 Grace$ R CMD INSTALL bcp * installing to library '/Library/Frameworks/R.framework/Resources/library' * installing *source* package 'bcp' ... ** libs make: *** No rule to make target `Cbcp.o', needed by `bcp.so'. Stop. *** arch - i386 g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/Rcpp/include" -fPIC -g -O2 -c Cbcp.cpp -o Cbcp.o /Library/Frameworks/R.framework/Resources/library/Rcpp/include/Rcpp/internal/export.h: In function 'void Rcpp::internal::export_range__dispatch(SEXPREC*, InputIterator, Rcpp::traits::r_type_primitive_tag)': /Library/Frameworks/R.framework/Resources/library/Rcpp/include/Rcpp/internal/export.h:56: internal compiler error: Bus error Please submit a full bug report, with preprocessed source if appropriate. See <URL:http://developer.apple.com/bugreporter> for instructions. make: *** [Cbcp.o] Error 1 ERROR: compilation failed for package 'bcp' * removing '/Library/Frameworks/R.framework/Resources/library/bcp' RESULT 2: I downloaded Xcode 3.1.3 from the web and restarted the computer and compiled R again. But Rcpp still cannot be installed; the error message is the same: > install.packages("Rcpp") --- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk interface ... done trying URL 'http://cran.stat.ucla.edu/src/contrib/Rcpp_0.9.2.tar.gz' Content type 'application/x-tar' length 1921635 bytes (1.8 Mb) opened URL ================================================== downloaded 1.8 Mb * installing *source* package 'Rcpp' ... ** libs g++ -I/Users/Grace/Study/Statistics/2011Spring/STAT662/Week10/R-2.12.2/include -I../inst/include/ -I/usr/local/include -fPIC -g -O2 -c Date.cpp -o Date.o ../inst/include/Rcpp/internal/export.h: In function 'void Rcpp::internal::export_range__dispatch(SEXPREC*, InputIterator, Rcpp::traits::r_type_primitive_tag)': ../inst/include/Rcpp/internal/export.h:56: internal compiler error: Bus error Please submit a full bug report, with preprocessed source if appropriate. See <URL:http://developer.apple.com/bugreporter> for instructions. make: *** [Date.o] Error 1 ERROR: compilation failed for package 'Rcpp' * removing '/Users/Grace/Study/Statistics/2011Spring/STAT662/Week10/R-2.12.2/library/Rcpp' The downloaded packages are in '/private/var/folders/rB/rByzYYffEzadShxSslfirU+++TI/-Tmp-/RtmpNVHfDM/downloaded_packages' Updating HTML index of packages in '.Library' Warning message: In install.packages("Rcpp") : installation of package 'Rcpp' had non-zero exit status -- John W. Emerson (Jay) Associate Professor of Statistics Department of Statistics Yale University http://www.stat.yale.edu/~jay _______________________________________________ Rcpp-devel mailing list Rcpp-devel@lists.r-forge.r-project.org https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
