I'm making a guess that the R-Forge setup is having the same problems as we are, though -- more than just RcppModels show that same bus error. Executive summary: I now have a local success, with his information given below, as well as information on one of the failures; it does indeed appear to be a compiler version issue, as Romain suspected. I'll badger the students again to make sure they are up to date.
Thanks! The success setup: R version 2.12.2 (2011-02-25) Copyright (C) 2011 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) $ g++ --version i686-apple-darwin10-g++-4.2.1 (GCC) 4.2.1 (Apple Inc. build 5664) Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. $ uname -a Darwin Taylors-MacBook-Pro.local 10.6.0 Darwin Kernel Version 10.6.0: Wed Nov 10 18:13:17 PST 2010; root:xnu-1504.9.26~3/RELEASE_I386 i386 ------------------------------------- My other student (who couldn't succeed) has an older version it appears. She seems to think she installed the newest version of everything, up apparently not. dhcp128036180037:R-2.12.2 Grace$ g++ --version i686-apple-darwin9-g++-4.0.1 (GCC) 4.0.1 (Apple Inc. build 5493) Copyright (C) 2005 Free Software Foundation, Inc. dhcp128036180037:Week10 Grace$ uname -a Darwin dhcp128036046230.central.yale.edu 9.8.0 Darwin Kernel Version 9.8.0: Wed Jul 15 16:55:01 PDT 2009; root:xnu-1228.15.4~1/RELEASE_I386 i386 On Tue, Apr 5, 2011 at 12:14 PM, Dirk Eddelbuettel <e...@debian.org> wrote: > > Hi Jay, > > Thanks for posting here! > > On 5 April 2011 at 11:59, Jay Emerson wrote: > | I've Rcpp-ified the new package bcp (Bayesian change point analysis) > | and it seems to work on Linux and Windows. We're having some Mac > | problems (and I don't have a Mac). I have one current and one past > | student, both getting similar problems in different ways. For one, > | she started with (I think) Rcpp installing properly, but the RESULT 1 > | bus error when trying to build bcp. I recommended she rebuild R from > | scratch using updated everyting; after doing so, she got a similar bus > | error RESULT 2, this time in the process of trying to install Rcpp. > | The other student has the same bus error. > | > | I've exhausted my guesses and recommendations. I note the same bus > | error appears in some RcppModel logs, at > | > | > https://r-forge.r-project.org/R/?group_id=155&log=build_mac&pkg=RcppModels&flavor=patched > | > | ?? Any advice ?? > > Hm, it so happens that Romain committed something today (r2950) which seems > to be around the same or similar spot -- I have not been hit by anything like > it. OS X uses g++ 4.2.1 which is starting to pose challenges as we are being > pushed at the same time to use g++ 4.5 and even 4.6 (now in Debian unstable > and already used by Kurt on CRAN tests). > > We sort-of have 0.9.3 pre-releases; we are being hang-up by a modules issue > right now we are debugging. Rcpp 0.9.3 may help you -- can you and your > students try the version from my site at > > http://dirk.eddelbuettel.com/code/rcpp/Rcpp_0.9.3.tar.gz > > I just put a new tarball there that corresponds to r2956 which is very > current. Passes R CMD check here... but it not 'officially released' so it > bites your cat and sets your car on fire none of that is our business :) > > Romain may have more pertinent help for the OS X issues. > > Dirk > > | Jay > | > | > | RESULT 1: > | xiao-yangs-macbook:Week10 Grace$ R CMD INSTALL bcp > | * installing to library '/Library/Frameworks/R.framework/Resources/library' > | * installing *source* package 'bcp' ... > | ** libs > | make: *** No rule to make target `Cbcp.o', needed by `bcp.so'. Stop. > | *** arch - i386 > | g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include > | -I/Library/Frameworks/R.framework/Resources/include/i386 > | -I/usr/local/include > | -I"/Library/Frameworks/R.framework/Resources/library/Rcpp/include" > | -fPIC -g -O2 -c Cbcp.cpp -o Cbcp.o > | > /Library/Frameworks/R.framework/Resources/library/Rcpp/include/Rcpp/internal/export.h: > | In function 'void Rcpp::internal::export_range__dispatch(SEXPREC*, > | InputIterator, Rcpp::traits::r_type_primitive_tag)': > | > /Library/Frameworks/R.framework/Resources/library/Rcpp/include/Rcpp/internal/export.h:56: > | internal compiler error: Bus error > | > | Please submit a full bug report, > | with preprocessed source if appropriate. > | See <URL:http://developer.apple.com/bugreporter> for instructions. > | make: *** [Cbcp.o] Error 1 > | ERROR: compilation failed for package 'bcp' > | * removing '/Library/Frameworks/R.framework/Resources/library/bcp' > | > | > | RESULT 2: > | I downloaded Xcode 3.1.3 from the web and restarted the computer and > | compiled R again. But Rcpp still cannot be installed; the error > | message is the same: > | > | > install.packages("Rcpp") > | --- Please select a CRAN mirror for use in this session --- > | Loading Tcl/Tk interface ... done > | trying URL 'http://cran.stat.ucla.edu/src/contrib/Rcpp_0.9.2.tar.gz' > | Content type 'application/x-tar' length 1921635 bytes (1.8 Mb) > | > | opened URL > | ================================================== > | downloaded 1.8 Mb > | > | * installing *source* package 'Rcpp' ... > | ** libs > | g++ > -I/Users/Grace/Study/Statistics/2011Spring/STAT662/Week10/R-2.12.2/include > | -I../inst/include/ -I/usr/local/include -fPIC -g -O2 -c Date.cpp > | -o Date.o > | ../inst/include/Rcpp/internal/export.h: In function 'void > | Rcpp::internal::export_range__dispatch(SEXPREC*, InputIterator, > | Rcpp::traits::r_type_primitive_tag)': > | ../inst/include/Rcpp/internal/export.h:56: internal compiler error: Bus > error > | Please submit a full bug report, > | with preprocessed source if appropriate. > | See <URL:http://developer.apple.com/bugreporter> for instructions. > | make: *** [Date.o] Error 1 > | ERROR: compilation failed for package 'Rcpp' > | * removing > '/Users/Grace/Study/Statistics/2011Spring/STAT662/Week10/R-2.12.2/library/Rcpp' > | > | The downloaded packages are in > | > '/private/var/folders/rB/rByzYYffEzadShxSslfirU+++TI/-Tmp-/RtmpNVHfDM/downloaded_packages' > | > | Updating HTML index of packages in '.Library' > | Warning message: > | In install.packages("Rcpp") : > | installation of package 'Rcpp' had non-zero exit status > | > | > | > | > | -- > | John W. Emerson (Jay) > | Associate Professor of Statistics > | Department of Statistics > | Yale University > | http://www.stat.yale.edu/~jay > | _______________________________________________ > | Rcpp-devel mailing list > | Rcpp-devel@lists.r-forge.r-project.org > | https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel > > -- > Dirk Eddelbuettel | e...@debian.org | http://dirk.eddelbuettel.com > -- John W. Emerson (Jay) Associate Professor of Statistics Department of Statistics Yale University http://www.stat.yale.edu/~jay _______________________________________________ Rcpp-devel mailing list Rcpp-devel@lists.r-forge.r-project.org https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
