Hi Jay, Thanks for posting here!
On 5 April 2011 at 11:59, Jay Emerson wrote: | I've Rcpp-ified the new package bcp (Bayesian change point analysis) | and it seems to work on Linux and Windows. We're having some Mac | problems (and I don't have a Mac). I have one current and one past | student, both getting similar problems in different ways. For one, | she started with (I think) Rcpp installing properly, but the RESULT 1 | bus error when trying to build bcp. I recommended she rebuild R from | scratch using updated everyting; after doing so, she got a similar bus | error RESULT 2, this time in the process of trying to install Rcpp. | The other student has the same bus error. | | I've exhausted my guesses and recommendations. I note the same bus | error appears in some RcppModel logs, at | | https://r-forge.r-project.org/R/?group_id=155&log=build_mac&pkg=RcppModels&flavor=patched | | ?? Any advice ?? Hm, it so happens that Romain committed something today (r2950) which seems to be around the same or similar spot -- I have not been hit by anything like it. OS X uses g++ 4.2.1 which is starting to pose challenges as we are being pushed at the same time to use g++ 4.5 and even 4.6 (now in Debian unstable and already used by Kurt on CRAN tests). We sort-of have 0.9.3 pre-releases; we are being hang-up by a modules issue right now we are debugging. Rcpp 0.9.3 may help you -- can you and your students try the version from my site at http://dirk.eddelbuettel.com/code/rcpp/Rcpp_0.9.3.tar.gz I just put a new tarball there that corresponds to r2956 which is very current. Passes R CMD check here... but it not 'officially released' so it bites your cat and sets your car on fire none of that is our business :) Romain may have more pertinent help for the OS X issues. Dirk | Jay | | | RESULT 1: | xiao-yangs-macbook:Week10 Grace$ R CMD INSTALL bcp | * installing to library '/Library/Frameworks/R.framework/Resources/library' | * installing *source* package 'bcp' ... | ** libs | make: *** No rule to make target `Cbcp.o', needed by `bcp.so'. Stop. | *** arch - i386 | g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include | -I/Library/Frameworks/R.framework/Resources/include/i386 | -I/usr/local/include | -I"/Library/Frameworks/R.framework/Resources/library/Rcpp/include" | -fPIC -g -O2 -c Cbcp.cpp -o Cbcp.o | /Library/Frameworks/R.framework/Resources/library/Rcpp/include/Rcpp/internal/export.h: | In function 'void Rcpp::internal::export_range__dispatch(SEXPREC*, | InputIterator, Rcpp::traits::r_type_primitive_tag)': | /Library/Frameworks/R.framework/Resources/library/Rcpp/include/Rcpp/internal/export.h:56: | internal compiler error: Bus error | | Please submit a full bug report, | with preprocessed source if appropriate. | See <URL:http://developer.apple.com/bugreporter> for instructions. | make: *** [Cbcp.o] Error 1 | ERROR: compilation failed for package 'bcp' | * removing '/Library/Frameworks/R.framework/Resources/library/bcp' | | | RESULT 2: | I downloaded Xcode 3.1.3 from the web and restarted the computer and | compiled R again. But Rcpp still cannot be installed; the error | message is the same: | | > install.packages("Rcpp") | --- Please select a CRAN mirror for use in this session --- | Loading Tcl/Tk interface ... done | trying URL 'http://cran.stat.ucla.edu/src/contrib/Rcpp_0.9.2.tar.gz' | Content type 'application/x-tar' length 1921635 bytes (1.8 Mb) | | opened URL | ================================================== | downloaded 1.8 Mb | | * installing *source* package 'Rcpp' ... | ** libs | g++ -I/Users/Grace/Study/Statistics/2011Spring/STAT662/Week10/R-2.12.2/include | -I../inst/include/ -I/usr/local/include -fPIC -g -O2 -c Date.cpp | -o Date.o | ../inst/include/Rcpp/internal/export.h: In function 'void | Rcpp::internal::export_range__dispatch(SEXPREC*, InputIterator, | Rcpp::traits::r_type_primitive_tag)': | ../inst/include/Rcpp/internal/export.h:56: internal compiler error: Bus error | Please submit a full bug report, | with preprocessed source if appropriate. | See <URL:http://developer.apple.com/bugreporter> for instructions. | make: *** [Date.o] Error 1 | ERROR: compilation failed for package 'Rcpp' | * removing '/Users/Grace/Study/Statistics/2011Spring/STAT662/Week10/R-2.12.2/library/Rcpp' | | The downloaded packages are in | '/private/var/folders/rB/rByzYYffEzadShxSslfirU+++TI/-Tmp-/RtmpNVHfDM/downloaded_packages' | | Updating HTML index of packages in '.Library' | Warning message: | In install.packages("Rcpp") : | installation of package 'Rcpp' had non-zero exit status | | | | | -- | John W. Emerson (Jay) | Associate Professor of Statistics | Department of Statistics | Yale University | http://www.stat.yale.edu/~jay | _______________________________________________ | Rcpp-devel mailing list | Rcpp-devel@lists.r-forge.r-project.org | https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel -- Dirk Eddelbuettel | e...@debian.org | http://dirk.eddelbuettel.com _______________________________________________ Rcpp-devel mailing list Rcpp-devel@lists.r-forge.r-project.org https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
