Hi list, I am having issues to build Rdisop on Mac (to which I have no access) after the upgrade to Rcpp 0.11.0 / RcppClassic 0.9.5, on both
http://bioconductor.org/checkResults/2.13/bioc-LATEST/Rdisop/perceval-buildsrc.html http://bioconductor.org/checkResults/2.14/bioc-LATEST/Rdisop/petty-buildsrc.html with the same error message. Somehow the "typeinfo for Rcpp::RObject" is not found in the shared library: Symbol not found: __ZTIN4Rcpp7RObjectE (typeinfo for Rcpp::RObject) Expected in: flat namespace Any idea how to get back it in there ? This sounds similar to [1] and [2] and would hint that "someone" (R ? BioC build farm ?) needs to set (at compile time[3]) export REQUIRES_RTTI=1 Thanks in advance, Yours, Steffen [1] https://github.com/llvmpy/llvmpy/issues/50 [2] http://stackoverflow.com/questions/9058594/building-and-running-llvm-py-on-mac-os-x [3] http://llvm.org/docs/Packaging.html#c-features The system is petty: http://bioconductor.org/checkResults/2.14/bioc-LATEST/petty-NodeInfo.html with Mac OS X Snow Leopard (10.6.8), R Under development (unstable) (2014-01-15 r64790) -- "Unsuffered Consequences" and llvm-g++-4.2 compiler. Installed packages here are: http://bioconductor.org/checkResults/2.14/bioc-LATEST/petty-R-instpkgs.html Rcpp 0.11.0 3.1.0 RcppClassic 0.9.5 3.1.0 [Don't mind the windows build failure, that comes next, but it only happens on one machine so it works somewhere.] ** testing if installed package can be loaded Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object ‘/private/tmp/RtmpoagsNv/Rinst13f9973b0c29a/Rdisop/libs/Rdisop.so’: dlopen(/private/tmp/RtmpoagsNv/Rinst13f9973b0c29a/Rdisop/libs/Rdisop.so, 6): Symbol not found: __ZTIN4Rcpp7RObjectE Referenced from: /private/tmp/RtmpoagsNv/Rinst13f9973b0c29a/Rdisop/libs/Rdisop.so Expected in: flat namespace in /private/tmp/RtmpoagsNv/Rinst13f9973b0c29a/Rdisop/libs/Rdisop.so Error: loading failed echo __ZTIN4Rcpp7RObjectE | c++filt -s auto -t -_ typeinfo for Rcpp::RObject -- IPB Halle AG Massenspektrometrie & Bioinformatik Dr. Steffen Neumann http://www.IPB-Halle.DE Weinberg 3 http://msbi.bic-gh.de 06120 Halle Tel. +49 (0) 345 5582 - 1470 +49 (0) 345 5582 - 0 sneumann(at)IPB-Halle.DE Fax. +49 (0) 345 5582 - 1409 _______________________________________________ Rcpp-devel mailing list Rcpp-devel@lists.r-forge.r-project.org https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
