----- Original Message ----- > From: "Dan Tenenbaum" <dtene...@fhcrc.org> > To: "Kevin Ushey" <kevinus...@gmail.com> > Cc: rcpp-devel@lists.r-forge.r-project.org > Sent: Thursday, February 6, 2014 10:49:29 AM > Subject: Re: [Rcpp-devel] Undefined Reference to typeinfo for Rcpp::RObject > for Rdisop on Mac after Rcpp/RcppClassic > update > > > > ----- Original Message ----- > > From: "Kevin Ushey" <kevinus...@gmail.com> > > To: "Dirk Eddelbuettel" <e...@debian.org> > > Cc: rcpp-devel@lists.r-forge.r-project.org > > Sent: Thursday, February 6, 2014 10:43:25 AM > > Subject: Re: [Rcpp-devel] Undefined Reference to typeinfo for > > Rcpp::RObject for Rdisop on Mac after Rcpp/RcppClassic > > update > > > > Apparently this is moot now, because it looks like Rdisop now > > builds > > successfully on BioC for all systems: > > http://bioconductor.org/checkResults/2.14/bioc-LATEST/Rdisop/petty-buildsrc.html, > > http://bioconductor.org/checkResults/2.13/bioc-LATEST/Rdisop/perceval-buildsrc.html. > > > > Did you have to change something in your package, or was it related > > to > > the BioC build system? > > > > The build system was pulling down a binary version of RcppClassic but > it needs to be built from source. >
Probably RcppCLassic needs a version bump? It was last updated 1/26, before the Rcpp update. Dan > Dan > > > > > Thanks, > > Kevin > > > > On Thu, Feb 6, 2014 at 10:41 AM, Kevin Ushey <kevinus...@gmail.com> > > wrote: > > > I wonder if the 'typeid' error could be a red herring and the > > > real > > > cause could be somehow related to virtual functions. If the > > > compiler > > > didn't know what 'typeid' meant (ie, had no RTTI) it would have > > > failed > > > on compilation, not linking, no? E.g.: > > > http://stackoverflow.com/questions/307352/g-undefined-reference-to-typeinfo > > > > > > I'll try to see if I can figure something out. > > > > > > -Kevin > > > > > > On Thu, Feb 6, 2014 at 6:34 AM, Dirk Eddelbuettel > > > <e...@debian.org> > > > wrote: > > >> > > >> On 6 February 2014 at 15:15, Steffen Neumann wrote: > > >> | Hi, > > >> | > > >> | On Thu, 2014-02-06 at 07:54 -0600, Dirk Eddelbuettel wrote: > > >> | ... > > >> | > Weird. If it is on the Mac, is that with g++-4.2 or with > > >> | > clang > > >> | > ? > > >> | ... > > >> | > | and llvm-g++-4.2 compiler. > > >> | > > >> | I don't know the terminology in llvm land, > > >> | the BioC system information page says "llvm-g++-4.2", > > >> | and there is more about the build environment on > > >> > > >> That's the old standard compiler that Simon still builds R with > > >> too. I would > > >> not know why it suddenly needs an RTTI switch. > > >> > > >> Dirk > > >> > > >> | > | > > >> http://bioconductor.org/checkResults/2.14/bioc-LATEST/petty-NodeInfo.html > > >> | > > >> | Did that help ? Otherwise we need input from Dan or Kevin. > > >> | > > >> | Yours, > > >> | Steffen > > >> | > > >> | > > >> | -- > > >> | IPB Halle AG Massenspektrometrie & > > >> | Bioinformatik > > >> | Dr. Steffen Neumann http://www.IPB-Halle.DE > > >> | Weinberg 3 http://msbi.bic-gh.de > > >> | 06120 Halle Tel. +49 (0) 345 5582 - 1470 > > >> | +49 (0) 345 5582 - 0 > > >> | sneumann(at)IPB-Halle.DE Fax. +49 (0) 345 5582 - 1409 > > >> | > > >> > > >> -- > > >> Dirk Eddelbuettel | e...@debian.org | > > >> http://dirk.eddelbuettel.com > > >> _______________________________________________ > > >> Rcpp-devel mailing list > > >> Rcpp-devel@lists.r-forge.r-project.org > > >> https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel > > _______________________________________________ > > Rcpp-devel mailing list > > Rcpp-devel@lists.r-forge.r-project.org > > https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel > > > _______________________________________________ > Rcpp-devel mailing list > Rcpp-devel@lists.r-forge.r-project.org > https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel > _______________________________________________ Rcpp-devel mailing list Rcpp-devel@lists.r-forge.r-project.org https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
