On 6 February 2014 at 13:05, Steffen Neumann wrote: | Hi list, | | I am having issues to build Rdisop on Mac (to which I have no access) | after the upgrade to Rcpp 0.11.0 / RcppClassic 0.9.5, on both | | http://bioconductor.org/checkResults/2.13/bioc-LATEST/Rdisop/perceval-buildsrc.html | http://bioconductor.org/checkResults/2.14/bioc-LATEST/Rdisop/petty-buildsrc.html | | with the same error message. Somehow the "typeinfo for Rcpp::RObject" | is not found in the shared library: | | Symbol not found: __ZTIN4Rcpp7RObjectE (typeinfo for Rcpp::RObject) | Expected in: flat namespace | | Any idea how to get back it in there ? This sounds similar | to [1] and [2] and would hint that "someone" | (R ? BioC build farm ?) needs to set (at compile time[3]) | | export REQUIRES_RTTI=1
Weird. If it is on the Mac, is that with g++-4.2 or with clang ? Dirk | Thanks in advance, | Yours, | Steffen | | [1] https://github.com/llvmpy/llvmpy/issues/50 | [2] http://stackoverflow.com/questions/9058594/building-and-running-llvm-py-on-mac-os-x | [3] http://llvm.org/docs/Packaging.html#c-features | | | The system is petty: | http://bioconductor.org/checkResults/2.14/bioc-LATEST/petty-NodeInfo.html | with Mac OS X Snow Leopard (10.6.8), | R Under development (unstable) (2014-01-15 r64790) -- "Unsuffered Consequences" | and llvm-g++-4.2 compiler. | | Installed packages here are: | http://bioconductor.org/checkResults/2.14/bioc-LATEST/petty-R-instpkgs.html | Rcpp 0.11.0 3.1.0 | RcppClassic 0.9.5 3.1.0 | | | [Don't mind the windows build failure, that comes next, | but it only happens on one machine so it works somewhere.] | | | ** testing if installed package can be loaded | Error in dyn.load(file, DLLpath = DLLpath, ...) : | unable to load shared object ‘/private/tmp/RtmpoagsNv/Rinst13f9973b0c29a/Rdisop/libs/Rdisop.so’: | dlopen(/private/tmp/RtmpoagsNv/Rinst13f9973b0c29a/Rdisop/libs/Rdisop.so, 6): Symbol not found: __ZTIN4Rcpp7RObjectE | Referenced from: /private/tmp/RtmpoagsNv/Rinst13f9973b0c29a/Rdisop/libs/Rdisop.so | Expected in: flat namespace | in /private/tmp/RtmpoagsNv/Rinst13f9973b0c29a/Rdisop/libs/Rdisop.so | Error: loading failed | | | echo __ZTIN4Rcpp7RObjectE | c++filt -s auto -t -_ | typeinfo for Rcpp::RObject | | | -- | IPB Halle AG Massenspektrometrie & Bioinformatik | Dr. Steffen Neumann http://www.IPB-Halle.DE | Weinberg 3 http://msbi.bic-gh.de | 06120 Halle Tel. +49 (0) 345 5582 - 1470 | +49 (0) 345 5582 - 0 | sneumann(at)IPB-Halle.DE Fax. +49 (0) 345 5582 - 1409 | | | _______________________________________________ | Rcpp-devel mailing list | Rcpp-devel@lists.r-forge.r-project.org | https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel -- Dirk Eddelbuettel | e...@debian.org | http://dirk.eddelbuettel.com _______________________________________________ Rcpp-devel mailing list Rcpp-devel@lists.r-forge.r-project.org https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
