Hello,
I’m building on top of Oracle R Community edition 3.2, Sun Studio 12.4 and
Solaris 11.2 some packages for internal use.
The error I get when trying to install Rcpp is:
> install.packages("dplyr");
also installing the dependency 'Rcpp'
trying URL 'http://cran.uni-muenster.de/src/contrib/Rcpp_0.12.3.tar.gz'
Content type 'application/x-gzip' length 2374320 bytes (2.3 MB)
==================================================
downloaded 2.3 MB
trying URL 'http://cran.uni-muenster.de/src/contrib/dplyr_0.4.3.tar.gz'
Content type 'application/x-gzip' length 655997 bytes (640 KB)
==================================================
downloaded 640 KB
* installing *source* package 'Rcpp' ...
** package 'Rcpp' successfully unpacked and MD5 sums checked
** libs
/opt/SunProd/studio12u3/solarisstudio12.3/bin/CC -m64
-I/usr/local/R/include -DNDEBUG -I../inst/include/ -KPIC -g -c
Date.cpp -o Date.o
"../inst/include/Rcpp/Interrupt.h", line 60: Warning (Anachronism): Using
void(*)(void*) to initialize extern "C" void(*)(void*).
"../inst/include/Rcpp/vector/MatrixRow.h", line 43: Error: iterator_traits
is not a member of std.
"../inst/include/Rcpp/vector/MatrixRow.h", line 43: Error: A declaration
does not specify a tag or an identifier.
"../inst/include/Rcpp/vector/MatrixRow.h", line 43: Error: Use ";" to
terminate declarations.
"../inst/include/Rcpp/vector/MatrixRow.h", line 43: Error: "}" expected
instead of "<".
"../inst/include/Rcpp/vector/MatrixRow.h", line 188: Error: iterator_traits
is not a member of std.
"../inst/include/Rcpp/vector/MatrixRow.h", line 188: Error: A declaration
does not specify a tag or an identifier.
"../inst/include/Rcpp/vector/MatrixRow.h", line 188: Error: Use ";" to
terminate declarations.
"../inst/include/Rcpp/vector/MatrixRow.h", line 188: Error: "}" expected
instead of "<".
"../inst/include/Rcpp/String.h", line 67: Warning: enc hides
Rcpp::String::enc.
"../inst/include/Rcpp/String.h", line 81: Warning: enc hides
Rcpp::String::enc.
"../inst/include/Rcpp/String.h", line 95: Warning: enc hides
Rcpp::String::enc.
"../inst/include/Rcpp/String.h", line 107: Warning: enc hides
Rcpp::String::enc.
"../inst/include/Rcpp/String.h", line 378: Error: Could not find a match
for std::wstring::basic_string(const char*, const char*) needed in
Rcpp::String::operator std::wstring () const.
9 Error(s) and 5 Warning(s) detected.
*** Error code 2
make: Fatal error: Command failed for target `Date.o'
ERROR: compilation failed for package 'Rcpp'
* removing '/usr/local/R/library/Rcpp'
ERROR: dependency 'Rcpp' is not available for package 'dplyr'
* removing '/usr/local/R/library/dplyr'
The downloaded source packages are in
'/tmp/RtmpPbHqdD/downloaded_packages'
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done
Warning messages:
1: In install.packages("dplyr") :
installation of package 'Rcpp' had non-zero exit status
2: In install.packages("dplyr") :
installation of package 'dplyr' had non-zero exit status
> q();
Can you point me what should I do further?
My .Renviron is as follows
TZ=CET
TERM=vt220
TAR=/usr/bin/tar
R_UNZIPCMD=/usr/bin/unzip
R_ZIPCMD=/usr/bin/zip
MAKE=/usr/bin/make
LD_LIBRARY_PATH=/usr/lib:/usr/local/R/lib:/lib:/usr/local/lib
PAGER=/usr/bin/less
R_BZIPCMD=/usr/bin/bzip2
R_GZIPCMD=/usr/bin/gzip
I made a symlink so that the compilation works. Unfortunately the R modules
have hard-coded the path to the compiler.
-bash-4.1# ls -la /opt/SunProd/studio12u3/solarisstudio12.3/bin
lrwxrwxrwx 1 root root 26 Feb 4 15:22
/opt/SunProd/studio12u3/solarisstudio12.3/bin -> /opt/solarisstudio12.4/bin
Can someone point me which compiler options/configure arguments are needed
so that the conversion and compilation is successful?
Thanks!
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