Thanks gents, I will use gcc for the future. Got version 4.8 in the official repository. What I'm afraid of that I may hit a nice dependency hell/soup when you have things compiled in Sun Studio ( Oracle R community edition) and on top you're compiling things with gcc. Best, Dimitar
2016-02-09 13:31 GMT+01:00 JJ Allaire <jj.alla...@gmail.com>: > Yes, all the checks pass on CRAN because they use the gcc toolchain for > Rcpp and all packages that depend on it: > > https://cran.r-project.org/web/checks/check_results_Rcpp.html > > > On Tue, Feb 9, 2016 at 7:28 AM, Dirk Eddelbuettel <e...@debian.org> wrote: > >> >> Hi Dimitar, >> >> On 9 February 2016 at 12:08, Dimitar Vassilev wrote: >> | Hello, >> | I’m building on top of Oracle R Community edition 3.2, Sun Studio 12.4 >> and >> | Solaris 11.2 some packages for internal use. >> >> The problem is likely the Sun Studio compiler. 'Nobody here' uses that >> anymore, and even CRAN / Oxford which tests on Solaris (x86,sparc) uses >> gcc >> per the tests page: >> >> https://cloud.r-project.org/web/checks/check_results_Rcpp.html >> >> | The error I get when trying to install Rcpp is: >> | > install.packages("dplyr"); >> | also installing the dependency 'Rcpp' >> | >> | trying URL 'http://cran.uni-muenster.de/src/contrib/Rcpp_0.12.3.tar.gz' >> | Content type 'application/x-gzip' length 2374320 bytes (2.3 MB) >> | ================================================== >> | downloaded 2.3 MB >> | >> | trying URL 'http://cran.uni-muenster.de/src/contrib/dplyr_0.4.3.tar.gz' >> | Content type 'application/x-gzip' length 655997 bytes (640 KB) >> | ================================================== >> | downloaded 640 KB >> | >> | * installing *source* package 'Rcpp' ... >> | ** package 'Rcpp' successfully unpacked and MD5 sums checked >> | ** libs >> | /opt/SunProd/studio12u3/solarisstudio12.3/bin/CC -m64 >> -I/usr/local/R/include >> | -DNDEBUG -I../inst/include/ -KPIC -g -c Date.cpp -o Date.o >> | "../inst/include/Rcpp/Interrupt.h", line 60: Warning (Anachronism): >> Using void >> | (*)(void*) to initialize extern "C" void(*)(void*). >> | "../inst/include/Rcpp/vector/MatrixRow.h", line 43: Error: >> iterator_traits is >> | not a member of std. >> >> We are doing things in C++ which are standard now, but for which Sun >> Studio >> does not seem to have caught up. >> >> Maybe you need to look into installing the gcc toolchain. >> >> Maybe another list reader has a better idea but I fear that is all we can >> say >> here. >> >> Greetings, Dirk >> >> | "../inst/include/Rcpp/vector/MatrixRow.h", line 43: Error: A >> declaration does >> | not specify a tag or an identifier. >> | "../inst/include/Rcpp/vector/MatrixRow.h", line 43: Error: Use ";" to >> terminate >> | declarations. >> | "../inst/include/Rcpp/vector/MatrixRow.h", line 43: Error: "}" expected >> instead >> | of "<". >> | "../inst/include/Rcpp/vector/MatrixRow.h", line 188: Error: >> iterator_traits is >> | not a member of std. >> | "../inst/include/Rcpp/vector/MatrixRow.h", line 188: Error: A >> declaration does >> | not specify a tag or an identifier. >> | "../inst/include/Rcpp/vector/MatrixRow.h", line 188: Error: Use ";" to >> | terminate declarations. >> | "../inst/include/Rcpp/vector/MatrixRow.h", line 188: Error: "}" expected >> | instead of "<". >> | "../inst/include/Rcpp/String.h", line 67: Warning: enc hides >> Rcpp::String::enc. >> | "../inst/include/Rcpp/String.h", line 81: Warning: enc hides >> Rcpp::String::enc. >> | "../inst/include/Rcpp/String.h", line 95: Warning: enc hides >> Rcpp::String::enc. >> | "../inst/include/Rcpp/String.h", line 107: Warning: enc hides >> | Rcpp::String::enc. >> | "../inst/include/Rcpp/String.h", line 378: Error: Could not find a >> match for >> | std::wstring::basic_string(const char*, const char*) needed in >> | Rcpp::String::operator std::wstring () const. >> | 9 Error(s) and 5 Warning(s) detected. >> | *** Error code 2 >> | make: Fatal error: Command failed for target `Date.o' >> | ERROR: compilation failed for package 'Rcpp' >> | * removing '/usr/local/R/library/Rcpp' >> | ERROR: dependency 'Rcpp' is not available for package 'dplyr' >> | * removing '/usr/local/R/library/dplyr' >> | >> | The downloaded source packages are in >> | '/tmp/RtmpPbHqdD/downloaded_packages' >> | Updating HTML index of packages in '.Library' >> | Making 'packages.html' ... done >> | Warning messages: >> | 1: In install.packages("dplyr") : >> | installation of package 'Rcpp' had non-zero exit status >> | 2: In install.packages("dplyr") : >> | installation of package 'dplyr' had non-zero exit status >> | > q(); >> | >> | Can you point me what should I do further? >> | My .Renviron is as follows >> | TZ=CET >> | TERM=vt220 >> | TAR=/usr/bin/tar >> | R_UNZIPCMD=/usr/bin/unzip >> | R_ZIPCMD=/usr/bin/zip >> | MAKE=/usr/bin/make >> | LD_LIBRARY_PATH=/usr/lib:/usr/local/R/lib:/lib:/usr/local/lib >> | PAGER=/usr/bin/less >> | R_BZIPCMD=/usr/bin/bzip2 >> | R_GZIPCMD=/usr/bin/gzip >> | I made a symlink so that the compilation works. Unfortunately the R >> modules >> | have hard-coded the path to the compiler. >> | -bash-4.1# ls -la /opt/SunProd/studio12u3/solarisstudio12.3/bin >> | lrwxrwxrwx 1 root root 26 Feb 4 15:22 >> /opt/SunProd/studio12u3/ >> | solarisstudio12.3/bin -> /opt/solarisstudio12.4/bin >> | >> | Can someone point me which compiler options/configure arguments are >> needed so >> | that the conversion and compilation is successful? >> | Thanks! >> | >> | _______________________________________________ >> | Rcpp-devel mailing list >> | Rcpp-devel@lists.r-forge.r-project.org >> | https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel >> >> -- >> http://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org >> _______________________________________________ >> Rcpp-devel mailing list >> Rcpp-devel@lists.r-forge.r-project.org >> https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel > > >
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