On 9 February 2016 at 13:41, Dimitar Vassilev wrote: | Thanks gents, | I will use gcc for the future. Got version 4.8 in the official repository. What | I'm afraid of that I may hit a nice dependency hell/soup when you have things | compiled in Sun Studio ( Oracle R community edition) and on top you're | compiling things with gcc.
I am wondering about that too ... but it could just work (as everything is behind 'export "C"' layers making it a more portable C interface). Very worst case just drop the 'community R' from your "friendly neighbourhood database seller" and install R from source. It will still talk to the db backends. Cheers, Dirk | Best, | Dimitar | | 2016-02-09 13:31 GMT+01:00 JJ Allaire <jj.alla...@gmail.com>: | | Yes, all the checks pass on CRAN because they use the gcc toolchain for | Rcpp and all packages that depend on it: | | https://cran.r-project.org/web/checks/check_results_Rcpp.html | | | On Tue, Feb 9, 2016 at 7:28 AM, Dirk Eddelbuettel <e...@debian.org> wrote: | | | Hi Dimitar, | | On 9 February 2016 at 12:08, Dimitar Vassilev wrote: | | Hello, | | I’m building on top of Oracle R Community edition 3.2, Sun Studio | 12.4 and | | Solaris 11.2 some packages for internal use. | | The problem is likely the Sun Studio compiler. 'Nobody here' uses that | anymore, and even CRAN / Oxford which tests on Solaris (x86,sparc) uses | gcc | per the tests page: | | https://cloud.r-project.org/web/checks/check_results_Rcpp.html | | | The error I get when trying to install Rcpp is: | | > install.packages("dplyr"); | | also installing the dependency 'Rcpp' | | | | trying URL 'http://cran.uni-muenster.de/src/contrib/ | Rcpp_0.12.3.tar.gz' | | Content type 'application/x-gzip' length 2374320 bytes (2.3 MB) | | ================================================== | | downloaded 2.3 MB | | | | trying URL 'http://cran.uni-muenster.de/src/contrib/ | dplyr_0.4.3.tar.gz' | | Content type 'application/x-gzip' length 655997 bytes (640 KB) | | ================================================== | | downloaded 640 KB | | | | * installing *source* package 'Rcpp' ... | | ** package 'Rcpp' successfully unpacked and MD5 sums checked | | ** libs | | /opt/SunProd/studio12u3/solarisstudio12.3/bin/CC -m64 -I/usr/local/R/ | include | | -DNDEBUG -I../inst/include/ -KPIC -g -c Date.cpp -o Date.o | | "../inst/include/Rcpp/Interrupt.h", line 60: Warning (Anachronism): | Using void | | (*)(void*) to initialize extern "C" void(*)(void*). | | "../inst/include/Rcpp/vector/MatrixRow.h", line 43: Error: | iterator_traits is | | not a member of std. | | We are doing things in C++ which are standard now, but for which Sun | Studio | does not seem to have caught up. | | Maybe you need to look into installing the gcc toolchain. | | Maybe another list reader has a better idea but I fear that is all we | can say | here. | | Greetings, Dirk | | | "../inst/include/Rcpp/vector/MatrixRow.h", line 43: Error: A | declaration does | | not specify a tag or an identifier. | | "../inst/include/Rcpp/vector/MatrixRow.h", line 43: Error: Use ";" to | terminate | | declarations. | | "../inst/include/Rcpp/vector/MatrixRow.h", line 43: Error: "}" | expected instead | | of "<". | | "../inst/include/Rcpp/vector/MatrixRow.h", line 188: Error: | iterator_traits is | | not a member of std. | | "../inst/include/Rcpp/vector/MatrixRow.h", line 188: Error: A | declaration does | | not specify a tag or an identifier. | | "../inst/include/Rcpp/vector/MatrixRow.h", line 188: Error: Use ";" | to | | terminate declarations. | | "../inst/include/Rcpp/vector/MatrixRow.h", line 188: Error: "}" | expected | | instead of "<". | | "../inst/include/Rcpp/String.h", line 67: Warning: enc hides | Rcpp::String::enc. | | "../inst/include/Rcpp/String.h", line 81: Warning: enc hides | Rcpp::String::enc. | | "../inst/include/Rcpp/String.h", line 95: Warning: enc hides | Rcpp::String::enc. | | "../inst/include/Rcpp/String.h", line 107: Warning: enc hides | | Rcpp::String::enc. | | "../inst/include/Rcpp/String.h", line 378: Error: Could not find a | match for | | std::wstring::basic_string(const char*, const char*) needed in | | Rcpp::String::operator std::wstring () const. | | 9 Error(s) and 5 Warning(s) detected. | | *** Error code 2 | | make: Fatal error: Command failed for target `Date.o' | | ERROR: compilation failed for package 'Rcpp' | | * removing '/usr/local/R/library/Rcpp' | | ERROR: dependency 'Rcpp' is not available for package 'dplyr' | | * removing '/usr/local/R/library/dplyr' | | | | The downloaded source packages are in | | '/tmp/RtmpPbHqdD/downloaded_packages' | | Updating HTML index of packages in '.Library' | | Making 'packages.html' ... done | | Warning messages: | | 1: In install.packages("dplyr") : | | installation of package 'Rcpp' had non-zero exit status | | 2: In install.packages("dplyr") : | | installation of package 'dplyr' had non-zero exit status | | > q(); | | | | Can you point me what should I do further? | | My .Renviron is as follows | | TZ=CET | | TERM=vt220 | | TAR=/usr/bin/tar | | R_UNZIPCMD=/usr/bin/unzip | | R_ZIPCMD=/usr/bin/zip | | MAKE=/usr/bin/make | | LD_LIBRARY_PATH=/usr/lib:/usr/local/R/lib:/lib:/usr/local/lib | | PAGER=/usr/bin/less | | R_BZIPCMD=/usr/bin/bzip2 | | R_GZIPCMD=/usr/bin/gzip | | I made a symlink so that the compilation works. Unfortunately the R | modules | | have hard-coded the path to the compiler. | | -bash-4.1# ls -la /opt/SunProd/studio12u3/solarisstudio12.3/bin | | lrwxrwxrwx 1 root root 26 Feb 4 15:22 /opt/SunProd/ | studio12u3/ | | solarisstudio12.3/bin -> /opt/solarisstudio12.4/bin | | | | Can someone point me which compiler options/configure arguments are | needed so | | that the conversion and compilation is successful? | | Thanks! | | | | _______________________________________________ | | Rcpp-devel mailing list | | Rcpp-devel@lists.r-forge.r-project.org | | https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/ | rcpp-devel | | -- | http://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org | _______________________________________________ | Rcpp-devel mailing list | Rcpp-devel@lists.r-forge.r-project.org | https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel | | | | -- http://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org _______________________________________________ Rcpp-devel mailing list Rcpp-devel@lists.r-forge.r-project.org https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
