I have followed the process, everything except for the very last step
seems to have worked out Ok.
I'm attaching the error log from 
bjam --toolset=gcc --without-python all-libraries
(done in rdkit-svn/Code)

I'm still concerned about environment variables that have "C:.." (or n:)
in them - using shell window from Msys installation there is no
necessity for those. I think this mix of unix and windows-style
directory names is the root of the problem.

Igor

On Wed, 2008-11-26 at 09:05 +0100, Greg Landrum wrote:
> On Tue, Nov 25, 2008 at 9:23 PM, Igor Filippov <[email protected]> 
> wrote:
> >
> >> The first includes some changes to the build system that allow the
> >> RDKit to be built using the mingw system on windows. If you don't know
> >> what this means, it's probably not important to you, so don't worry
> >> about it. :-)
> >>
> > Has anyone else been successful with mingw build system?
> > I would love to see detailed instructions, as I was not able to manage
> > it myself...
> 
> I've put a pretty detailed walkthrough of the build process that
> worked for me on the wiki:
> http://code.google.com/p/rdkit/wiki/BuildingWithMinGW
> I've tested this process (with different paths) on two different
> machines and it seems reasonably robust. I'm sure there will still be
> problems though, so please post as you find them.
> 
> -greg
> 
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c:/msys/1.0/home/Administrator/boost_1_37_0/tools/build/v2/build\project.jam:267:
 in find-jamfile from module project
error: Unable to load Jamfile.
error: Could not find a Jamfile in directory 
'/c:/msys/1.0/home/Administrator/rdkit-svn/External'.
error: Attempted to find it with pattern 
'[Bb]uild.jam[Jj]amfile.v2[Jj]amfile[Jj]amfile.jam )'.
error: Please consult the documentation at 'http://www.boost.org'.
c:/msys/1.0/home/Administrator/boost_1_37_0/tools/build/v2/build\project.jam:287:
 in load-jamfile from module project
c:/msys/1.0/home/Administrator/boost_1_37_0/tools/build/v2/build\project.jam:62:
 in project.load from module project
c:/msys/1.0/home/Administrator/boost_1_37_0/tools/build/v2/build\project.jam:736:
 in project.use from module project
c:/msys/1.0/home/Administrator/boost_1_37_0/tools/build/v2/build\project.jam:89:
 in load-used-projects from module project
c:/msys/1.0/home/Administrator/boost_1_37_0/tools/build/v2/build\project.jam:73:
 in load from module project
c:/msys/1.0/home/Administrator/boost_1_37_0/tools/build/v2/build\project.jam:168:
 in project.find from module project
c:/msys/1.0/home/Administrator/boost_1_37_0/tools/build/v2\build-system.jam:535:
 in load from module build-system
c:\msys\1.0\home\Administrator\boost_1_37_0\tools\build\v2/kernel\modules.jam:283:
 in import from module modules
c:\msys\1.0\home\Administrator\boost_1_37_0\tools\build\v2/kernel/bootstrap.jam:128:
 in boost-build from module
c:\msys\1.0\home\Administrator\boost_1_37_0\boost-build.jam:16: in module scope 
from module

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