I tried that, also with adding --prefix=/home... to both boost and RDKit bjam run options but it's still the same error. I wonder where does it get c:/ prefix...
Igor On Wed, 2008-11-26 at 20:37 +0100, Greg Landrum wrote: > On Wed, Nov 26, 2008 at 8:11 PM, Igor Filippov [Contr] > <[email protected]> wrote: > > I have followed the process, everything except for the very last step > > seems to have worked out Ok. > > I'm attaching the error log from > > bjam --toolset=gcc --without-python all-libraries > > (done in rdkit-svn/Code) > > > > I'm still concerned about environment variables that have "C:.." (or n:) > > in them - using shell window from Msys installation there is no > > necessity for those. I think this mix of unix and windows-style > > directory names is the root of the problem. > > It has worked for me, but I am using clean installs of recent versions > of msys and mingw. What happens if you try using unix-style paths in > your env vars? > > -greg

