I was able to get the code compiled without any reported errors on a Fedora
12 system with GCC 4.4.2 and Python 2.6.2. When I tried to use it
however, 'from rdkit import Chem' gave me a segmentation fault. Just to
test the system, I was able to get the Q3_2009_1 code built with the same
build of boost (1.41.0), etc.
-Kirk
On Jan 16, 2010 12:35pm, Greg Landrum <[email protected]> wrote:
Ah yes... 64bit builds.
I just changed two files. Can you please try again?
Thanks,
-greg
On Sat, Jan 16, 2010 at 8:10 PM, Adrian Schreyer
[email protected]> wrote:
> The build was almost successful, I got only the following error:
>
> Scanning dependencies of target rdFeatSelect
> [ 96%] Building CXX object
>
Code/ML/FeatureSelect/Wrap/CMakeFiles/rdFeatSelect.dir/rdFeatSelect.cpp.o
> Linking CXX shared module rdFeatSelect.so
>
/usr/bin/ld: ../../../../External/cmim-1.0/libfastentropy.a(fastentropy.cc.o):
> relocation R_X86_64_32 against `.bss' can not be used when making a
> shared object; recompile with -fPIC
> ../../../../External/cmim-1.0/libfastentropy.a: could not read
> symbols: Bad value
> collect2: ld returned 1 exit status
> make[2]: *** [Code/ML/FeatureSelect/Wrap/rdFeatSelect.so] Error 1
> make[1]: ***
[Code/ML/FeatureSelect/Wrap/CMakeFiles/rdFeatSelect.dir/all]
> Error 2
> make: *** [all] Error 2
>
> On Sat, Jan 16, 2010 at 18:37, Greg Landrum [email protected]>
wrote:
>> Hi Adrian,
>>
>> On Sat, Jan 16, 2010 at 6:56 PM, Adrian Schreyer
>> [email protected]> wrote:
>>> Hi Greg,
>>>
>>> I pulled the latest version from Google Code but I cannot find any
>>> lists file for CMake. Is there a specific branch I need to pull?
>>
>> The version of the code in Google Code is woefully out of date. Please
>> pull from sourceforge instead:
>> https://rdkit.svn.sourceforge.net/svnroot/rdkit
>>
>> -greg
>>
>
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