I am installing the brand new RDKit (2011_03_2) on CentOS (lol!) on a Friday
evening (6.54pm here in Oxford)... So I probably deserve the misery of the
following.
I have already gone through the whole RDKit on Centos installation procedure
and pain on other machines and I now am undaunted by it. Bring it on.
Still I installed everything (almost) according to the book (
http://code.google.com/p/rdkit/wiki/BuildingOnCentOS) with the exception
that I stuck to Python 2.4.3 (Python 2.7, doesn't play nicely with Rocks)
And I get this anti-fancy error message
>>> from rdkit import Chem
Traceback (most recent call last):
File "<stdin>", line 1, in ?
File "/share/apps/RDKit_2011_03_2/rdkit/Chem/__init__.py", line 18, in ?
from rdkit import rdBase
ImportError: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.9' not found
(required by /share/apps/RDKit_2011_03_2/rdkit/rdBase.so)
Any ideas?
[jp@xxx build]$ echo $LD_LIBRARY_PATH
/share/apps/RDKit_2011_03_2/lib:/share/apps/boost_1_46_1/lib:/opt/gridengine/lib/lx26-amd64:/share/apps/openbabel/lib:/usr/local/lib:/share/apps/openbabel/lib:
[jp@xxx build]$ echo $PYTHONPATH
:/share/apps/RDKit_2011_03_2
[jp@xxx build]$ echo $RDBASE
/share/apps/RDKit_2011_03_2
Any sympathy will be greatly appreciated.
Cheers
JP
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