Hi On Friday, June 10, 2011, JP <[email protected]> wrote: > I am installing the brand new RDKit (2011_03_2) on CentOS (lol!) on a Friday > evening (6.54pm here in Oxford)... So I probably deserve the misery of the > following.
Nobody deserves the misery of working with Centos. ;-) > I have already gone through the whole RDKit on Centos installation procedure > and pain on other machines and I now am undaunted by it. Bring it on. Good attitude! > > Still I installed everything (almost) according to the book > (http://code.google.com/p/rdkit/wiki/BuildingOnCentOS) with the exception > that I stuck to Python 2.4.3 (Python 2.7, doesn't play nicely with Rocks) > > > And I get this anti-fancy error message >>>> from rdkit import ChemTraceback (most recent call last): File "<stdin>", >>>> line 1, in ? > > File "/share/apps/RDKit_2011_03_2/rdkit/Chem/__init__.py", line 18, in ? > from rdkit import rdBaseImportError: /usr/lib64/libstdc++.so.6: version > `GLIBCXX_3.4.9' not found (required by > /share/apps/RDKit_2011_03_2/rdkit/rdBase.so) That is a glibc problem. It means that you are using something that has been built with a version of g++ that is more modern than the version of libstdc++ (I think) that is being found. You might want to google around a little bit for the error message in combination with centos and see what you can find. Believe it or not, this doesn't have much to do with the rdkit. -greg > > > Any ideas? > [jp@xxx build]$ echo > $LD_LIBRARY_PATH/share/apps/RDKit_2011_03_2/lib:/share/apps/boost_1_46_1/lib:/opt/gridengine/lib/lx26-amd64:/share/apps/openbabel/lib:/usr/local/lib:/share/apps/openbabel/lib: > > > [jp@xxx build]$ echo $PYTHONPATH :/share/apps/RDKit_2011_03_2 > [jp@xxx build]$ echo $RDBASE /share/apps/RDKit_2011_03_2 > > > Any sympathy will be greatly appreciated. > CheersJP > ------------------------------------------------------------------------------ EditLive Enterprise is the world's most technically advanced content authoring tool. Experience the power of Track Changes, Inline Image Editing and ensure content is compliant with Accessibility Checking. http://p.sf.net/sfu/ephox-dev2dev _______________________________________________ Rdkit-discuss mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
