Hi Yingfeng,
I have not yet built the RDKit with boost 1.54.0. This makes it hard for me
to know if the problem is the new version of boost, centos, or something
with your configuration.
Any chance that you can go back to an older version of boost like 1.51?
-greg
On Sunday, July 14, 2013, Yingfeng Wang wrote:
> I failed to install RDKit on CentOS.
>
> The error message is
>
> [ 85%] Built target MolChemicalFeatures
> Linking CXX executable testSLNParse
> [ 85%] Built target rdSLNParse
> /home/yingfeng/software/boost/boost_1_54_0/stage/lib/libboost_regex.so:
> undefined reference to
> `std::__detail::_List_node_base::_M_unhook()@GLIBCXX_3.4.15'
> /home/yingfeng/software/boost/boost_1_54_0/stage/lib/libboost_regex.so:
> undefined reference to
> `std::overflow_error::~overflow_error()@GLIBCXX_3.4.15'
> /home/yingfeng/software/boost/boost_1_54_0/stage/lib/libboost_regex.so:
> undefined reference to
> `std::__detail::_List_node_base::_M_hook(std::__detail::_List_node_base*)@GLIBCXX_3.4.15'
> /home/yingfeng/software/boost/boost_1_54_0/stage/lib/libboost_regex.so:
> undefined reference to `std::ctype<char>::_M_widen_init()
> const@GLIBCXX_3.4.11'
> /home/yingfeng/software/boost/boost_1_54_0/stage/lib/libboost_regex.so:
> undefined reference to
> `std::invalid_argument::~invalid_argument()@GLIBCXX_3.4.15'
> /home/yingfeng/software/boost/boost_1_54_0/stage/lib/libboost_regex.so:
> undefined reference to
> `std::__detail::_List_node_base::_M_transfer(std::__detail::_List_node_base*,
> std::__detail::_List_node_base*)@GLIBCXX_3.4.15'
> collect2: ld returned 1 exit status
> make[2]: *** [Code/GraphMol/SLNParse/testSLNParse] Error 1
> make[1]: *** [Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/all]
> Error 2
>
> I tried
> cmake -D BOOST_ROOT=/home/yingfeng/software/boost/boost_1_54_0 ..
> cmake -D BOOST_ROOT=/home/yingfeng/software/boost/boost_1_54_0 -D
> Boost_USE_STATIC_LIBS=OFF ..
> cmake -D BOOST_ROOT=/home/yingfeng/software/boost/boost_1_54_0 -D
> Boost_USE_STATIC_LIBS=OFF -D Boost_NO_SYSTEM_PATHS=ON ..
>
> Thanks.
>
> Yingfeng
>
>
>
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