Hi,
Did you install the PostgreSQL development (header) files? Should be a
package called postgresql-server-dev or similar.
Adrian
On Mon, Oct 21, 2013 at 3:58 PM, <chemis...@gmx.de> wrote:
>
> Hi,
> I am a medicinal chemist and am using RDKit and the Postgresql cartridge
> with much success in a small startup project as the backbone for the
> chemical / biological database and for cheminformatics (Lipinski and such,
> substructure and similarity searches, ...).
> I have just upgraded from RDKit_2013_03_2.tgz to RDKit_2013_06_1.tgz on
> Arch Linux (but using bison 2.7) and as far as I can tell, the upgrade was
> ok, rdkit is working fine in IPython.
> But in postgresql, I now get this error:
> psql (9.2.4)
> db=# select cpd_no, mol_to_smiles(mol) as smiles, lab_code from
> chem_cpd, chem_batch
> where cpd_pk = 150 and cpd_pk = cpd_fk;
> ERROR: could not load library "/usr/lib/postgresql/rdkit.so":
> /usr/lib/postgresql/rdkit.so: undefined symbol: palloc
> db=#
> I have rebuilt the cartridge of the new version, of course.
> Do you have any ideas what might cause this error ?
> Many thanks in advance,
> Axel
>
>
> ------------------------------------------------------------------------------
> October Webinars: Code for Performance
> Free Intel webinars can help you accelerate application performance.
> Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most
> from
> the latest Intel processors and coprocessors. See abstracts and register >
> http://pubads.g.doubleclick.net/gampad/clk?id=60135031&iu=/4140/ostg.clktrk
> _______________________________________________
> Rdkit-discuss mailing list
> Rdkit-discuss@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
>
>
------------------------------------------------------------------------------
October Webinars: Code for Performance
Free Intel webinars can help you accelerate application performance.
Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from
the latest Intel processors and coprocessors. See abstracts and register >
http://pubads.g.doubleclick.net/gampad/clk?id=60135031&iu=/4140/ostg.clktrk
_______________________________________________
Rdkit-discuss mailing list
Rdkit-discuss@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
