Hi Greg,
So I pulled the development version, the memory issue is indeed resolved!
I had no issues building the wrappers using Cmake (v. 2.8.10.2), Boost
(v.1.55), and Swig (2.0.10) on CentOS 6.4-6.5.
Thanks so much Greg!
Matt
On Thu, May 29, 2014 at 10:44 AM, Greg Landrum <[email protected]>
wrote:
> The code distribution on source forge hasn't been updated in over a year.
> Please use github instead
>
>
> On Thursday, May 29, 2014, Matthew Lardy <[email protected]> wrote:
>
>> Hi Greg,
>>
>> So I took a development copy from sourceforge, but I am now unable to
>> compile the C++ code. Is anyone else having this issue?
>>
>> Linking CXX executable graphmolIterTest
>> libSmilesParse.so.1.2013.06.1pre: undefined reference to `yysmarts_debug'
>>
>> Thanks in advance!
>> Matt
>>
>>
>> On Sat, May 24, 2014 at 12:34 PM, Matthew Lardy <[email protected]> wrote:
>>
>>> Thanks Greg! Yep, I built the wrappers with Swig myself. I'll update
>>> on Tuesday and give it a whirl.
>>>
>>> I noticed on another thread that someone needed the incantation to build
>>> the jar file in CentOS. I'll also pull back my conditions and post them
>>> there.
>>>
>>> Thanks again!
>>> Matt
>>>
>>>
>>> On Fri, May 23, 2014 at 9:17 PM, Greg Landrum <[email protected]>
>>> wrote:
>>>
>>>> Hi Matt,
>>>>
>>>>
>>>> On Fri, May 23, 2014 at 6:01 PM, Matthew Lardy <[email protected]>
>>>> wrote:
>>>>
>>>>> Hi all,
>>>>>
>>>>> I am loving the Swig based wrappers for RDKit,
>>>>>
>>>>
>>>> Great to hear!
>>>>
>>>>
>>>>> but I keep running across one issue. Memory use. Using the
>>>>> SDMolSupplier I typically eat 2-3GBs of memory to process 10-20K
>>>>> molecules.
>>>>>
>>>>
>>>> Less great to hear. ;-)
>>>>
>>>>
>>>>> Is anyone else having this issue and, if so, has anyone solved it?
>>>>>
>>>>
>>>> I just set up a quick test, confirmed the problem, and fixed it.
>>>> The fix is checked in, are you using a self-built version of the
>>>> wrappers?
>>>>
>>>> -greg
>>>>
>>>>
>>>>
>>>
>>
------------------------------------------------------------------------------
Time is money. Stop wasting it! Get your web API in 5 minutes.
www.restlet.com/download
http://p.sf.net/sfu/restlet
_______________________________________________
Rdkit-discuss mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
