Sorry, this task of the generic formatted file is far more complicated than I thought. It's structure should be modelled after the generic_fns.value.read() function, as this takes a similarly formatted file. Flexibility here is key - any int arguments for the mol_name_col, res_num_col, res_name_col, spin_num_col, spin_name_col should be acceptable. I.e. you can put this information at the end of the file if you are crazy enough. But most of the code in generic_fns.value.read() can be used. It just needs to be shifted into functions of generic_fns.spectrum such as number_of_header_lines() and intensity_generic().
In the future I might write some functions in generic_fns.mol_res_spin to parse any spin specific but generically formatted file. But for now, the generic_fns.value.read() function needs to be mimicked. This is an insanely complex task, considering the additional flexibility I talked about in https://mail.gna.org/public/relax-devel/2008-12/msg00016.html especially the automatic reading with the spin specific columns being allowed to be anywhere. So if you think this is too much, I can take over at any point. Regards, Edward On Thu, Dec 4, 2008 at 7:30 PM, <[EMAIL PROTECTED]> wrote: > Author: semor > Date: Thu Dec 4 19:30:11 2008 > New Revision: 8138 > > URL: http://svn.gna.org/viewcvs/relax?rev=8138&view=rev > Log: > Modified the autodetection code for the generic format. > > This now recognizes the most generic format as in > 'test_suite/shared_data/peak_lists/generic_intensity2.txt'. > > > Modified: > 1.3/generic_fns/spectrum.py > > Modified: 1.3/generic_fns/spectrum.py > URL: > http://svn.gna.org/viewcvs/relax/1.3/generic_fns/spectrum.py?rev=8138&r1=8137&r2=8138&view=diff > ============================================================================== > --- 1.3/generic_fns/spectrum.py (original) > +++ 1.3/generic_fns/spectrum.py Thu Dec 4 19:30:11 2008 > @@ -254,7 +254,7 @@ > break > > # Generic format. > - if line[0] in ['mol_name', 'res_num', 'res_name', 'spin_num', > 'spin_name']: > + if line[0] in ['mol_name', 'res_num', 'res_name', 'spin_num', > 'spin_name'] or line[0] in ['Num', 'Name']: > return 'generic' > > # Sparky format. > > > _______________________________________________ > relax (http://nmr-relax.com) > > This is the relax-commits mailing list > [EMAIL PROTECTED] > > To unsubscribe from this list, get a password > reminder, or change your subscription options, > visit the list information page at > https://mail.gna.org/listinfo/relax-commits > _______________________________________________ relax (http://nmr-relax.com) This is the relax-devel mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-devel
