Dr Edwards,
I tried to run the below commands you sent to me on one of the files
~/relax-1.3.3/test_suite/shared_data/model_free/results_1.2.bz2
relax> pipe.create('prdata','mf')
relax> results.read('results_1.2')
Opening the file 'results_1.2.bz2' for reading.
relax 1.2 model-free results file.
Generating the sequence.
Setting the diffusion tensor.
Diffusion type: sphere
relax> value.display('S2')
RelaxError: The parameter argument None must be a string.
if i say
relax> value.display('prdata','S2')
Traceback (most recent call last):
File "<console>", line 1, in <module>
File "/home/prem/programs/relax-1.3.3/prompt/value.py", line 152, in display
self.__relax__.generic.value.display(run=run, param=param)
TypeError: display() got an unexpected keyword argument 'run'
I get the above error.
i am still trying to get a grip on RELAX. sorry to trouble you with these
trivial issues.
thanks
prem
Prem Raj B Joseph
Post Dcotoral Fellow
Dept. of Biochemistry and Molecular Biology
Sealy Center for Structural Biology and Molecular Biophysics
5.142 Medical Branch Building
University of Texas Medical Branch
Galveston, TX 77555-1055
Cell: 409-354-8536
________________________________
From: Edward d'Auvergne <[email protected]>
To: Raj Jose <[email protected]>
Cc: [email protected]
Sent: Thursday, February 19, 2009 3:45:32 AM
Subject: Re: question regarding output format
Hi,
This depends on which format you would like to use. There is one
script, sample_scripts/latex_mf_table.py, that will generate a LaTeX
table from your model-free data. If this is not what you need, then
the output text file could possibly also be imported into Excel as a
field delimited file with the delimiter set to '&'. If you need
something a bit different, this script could be modified to produce
the table in a slightly different format. Or you could output the
results by typing the following into the relax:
pipe.create('my data', 'mf')
results.read('your_results_file')
value.display('S2')
value.display('S2f')
value.display('S2s')
value.display('te')
value.display('tf')
value.display('ts')
value.display('Rex')
etc. I hope this helps. Otherwise there is alway the option of
cutting and pasting from the results file directly.
Regards,
Edward
On Thu, Feb 19, 2009 at 2:06 AM, Raj Jose <[email protected]> wrote:
> Hello,
>
> Thanks Dr. Edward for the reply and the suggestions.
> I was wondering if there are any general python scripts available to get
> the final outputs in a presentable
> format of all the modelfree parameter , for all the residues after the
> final run.
>
> thanks
> prem
>
> Prem Raj B Joseph
> Post Dcotoral Fellow
> Dept. of Biochemistry and Molecular Biology
> Sealy Center for Structural Biology and Molecular Biophysics
> 5.142 Medical Branch Building
> University of Texas Medical Branch
> Galveston, TX 77555-1055
> Cell: 409-354-8536
>
>
>
>
>
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