Hi, What you have encountered here is a bug. It is a relic of a complete redesign of relax which happened between the 1.2 and 1.3 versions, where some small bits of code have not yet been converted to the new design. I fixed this bug a few days ago for you though. These changes are located in the relax source code repository. You can either wait for me to release a new version (which probably will not occur for while) or to fetch the code directly from the relax repository. For the last option, you just have to type:
$ svn co svn://svn.gna.org/svn/relax/1.3 relax-1.3 or if this doesn't work: $ svn co http://svn.gna.org/svn/relax/1.3 relax-1.3 You will need the Subversion program installed to do this. The copy of relax in the resultant 'relax-1.3' directory will have the fixes you need. I hope this helps. Regards, Edward On Sat, Feb 21, 2009 at 4:33 PM, Raj Jose <[email protected]> wrote: > Dr Edwards, > > I tried to run the below commands you sent to me on one of the files > ~/relax-1.3.3/test_suite/shared_data/model_free/results_1.2.bz2 > > > relax> pipe.create('prdata','mf') > relax> results.read('results_1.2') > Opening the file 'results_1.2.bz2' for reading. > relax 1.2 model-free results file. > > Generating the sequence. > > Setting the diffusion tensor. > Diffusion type: sphere > relax> value.display('S2') > RelaxError: The parameter argument None must be a string. > > if i say > > relax> value.display('prdata','S2') > Traceback (most recent call last): > File "<console>", line 1, in <module> > File "/home/prem/programs/relax-1.3.3/prompt/value.py", line 152, in > display > self.__relax__.generic.value.display(run=run, param=param) > TypeError: display() got an unexpected keyword argument 'run' > > I get the above error. > i am still trying to get a grip on RELAX. sorry to trouble you with these > trivial issues. > > thanks > > prem > > > > Prem Raj B Joseph > Post Dcotoral Fellow > Dept. of Biochemistry and Molecular Biology > Sealy Center for Structural Biology and Molecular Biophysics > 5.142 Medical Branch Building > University of Texas Medical Branch > Galveston, TX 77555-1055 > Cell: 409-354-8536 > > ________________________________ > From: Edward d'Auvergne <[email protected]> > To: Raj Jose <[email protected]> > Cc: [email protected] > Sent: Thursday, February 19, 2009 3:45:32 AM > Subject: Re: question regarding output format > > Hi, > > This depends on which format you would like to use. There is one > script, sample_scripts/latex_mf_table.py, that will generate a LaTeX > table from your model-free data. If this is not what you need, then > the output text file could possibly also be imported into Excel as a > field delimited file with the delimiter set to '&'. If you need > something a bit different, this script could be modified to produce > the table in a slightly different format. Or you could output the > results by typing the following into the relax: > > pipe.create('my data', 'mf') > results.read('your_results_file') > value.display('S2') > value.display('S2f') > value.display('S2s') > value.display('te') > value.display('tf') > value.display('ts') > value.display('Rex') > > etc. I hope this helps. Otherwise there is alway the option of > cutting and pasting from the results file directly. > > Regards, > > Edward > > > > > On Thu, Feb 19, 2009 at 2:06 AM, Raj Jose <[email protected]> wrote: >> Hello, >> >> Thanks Dr. Edward for the reply and the suggestions. >> I was wondering if there are any general python scripts available to get >> the final outputs in a presentable >> format of all the modelfree parameter , for all the residues after the >> final run. >> >> thanks >> prem >> >> Prem Raj B Joseph >> Post Dcotoral Fellow >> Dept. of Biochemistry and Molecular Biology >> Sealy Center for Structural Biology and Molecular Biophysics >> 5.142 Medical Branch Building >> University of Texas Medical Branch >> Galveston, TX 77555-1055 >> Cell: 409-354-8536 >> >> >> >> >> >> _______________________________________________ >> relax (http://nmr-relax.com) >> >> This is the relax-users mailing list >> [email protected] >> >> To unsubscribe from this list, get a password >> reminder, or change your subscription options, >> visit the list information page at >> https://mail.gna.org/listinfo/relax-users >> >> > > > > _______________________________________________ > relax (http://nmr-relax.com) > > This is the relax-users mailing list > [email protected] > > To unsubscribe from this list, get a password > reminder, or change your subscription options, > visit the list information page at > https://mail.gna.org/listinfo/relax-users > > _______________________________________________ relax (http://nmr-relax.com) This is the relax-users mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-users
