Hi, Does one of the following commands compile the module (with the test-suite passing as well)?
$ gcc -o maths_fns/relax_fit.so /sw/bin/python2.6 maths_fns/c_chi2.os maths_fns/exponential.os maths_fns/relax_fit.os $ gcc -o maths_fns/relax_fit.so /sw/bin/python2.6 -dynamic maths_fns/c_chi2.os maths_fns/exponential.os maths_fns/relax_fit.os $ gcc -o maths_fns/relax_fit.so -bundle_loader /sw/bin/python2.6 -dynamic maths_fns/c_chi2.os maths_fns/exponential.os maths_fns/relax_fit.os $ gcc -o maths_fns/relax_fit.so -bundle /sw/bin/python2.6 -dynamic maths_fns/c_chi2.os maths_fns/exponential.os maths_fns/relax_fit.os $ gcc -o maths_fns/relax_fit.so -module -bundle -bundle_loader /sw/bin/python2.6 maths_fns/c_chi2.os maths_fns/exponential.os maths_fns/relax_fit.os $ gcc -o maths_fns/relax_fit.so -module -bundle -bundle_loader /sw/bin/python2.6 -dynamic maths_fns/c_chi2.os maths_fns/exponential.os maths_fns/relax_fit.os Cheers, Edward 2009/8/17 Edward d'Auvergne <[email protected]>: > Hi, > > The way we can solve this issue is to first type the gcc linking > command by hand, rather than using scons. Then once all is > functional, I can fix the Scons script. Here is what Douglas Kojetin > did to make this work > (https://mail.gna.org/public/relax-devel/2006-11/msg00092.html), and > then I tailored the scons script to match. If you cut an past this > gcc command, can you compile the modules and run the system test > without failures? Also, once this is all functional, I would like to > get your changes (well, modified to be compatible with all other > operating systems) into the repository so that it is easier for you > next time. > > Cheers, > > Edward > > > > 2009/8/17 Jack Howarth <[email protected]>: >> Edward, >> I'll have to look into that as I'm not very familar with scons. >> Currently for 1.3.3, it is sufficient to use... >> >> --- relax-1.3.0.orig/relax 2007-02-19 00:36:06.000000000 -0500 >> +++ relax-1.3.0/relax 2008-08-11 02:13:30.000000000 -0400 >> @@ -1,4 +1,4 @@ >> -#! /usr/bin/env python >> +#! /usr/bin/env python2.X >> >> ############################################################################### >> # >> # >> --- relax-1.3.0/scons/install.py.sav 2008-08-10 15:31:01.000000000 -0400 >> +++ relax-1.3.0/scons/install.py 2008-08-10 16:01:22.000000000 -0400 >> @@ -112,8 +112,8 @@ >> ############### >> >> # Run relax to create the *.pyc files. >> - print "\nRunning relax to create the byte-compiled *.pyc files." >> - system(env['SYMLINK'] + " --test") >> + # print "\nRunning relax to create the byte-compiled *.pyc files." >> + # system(env['SYMLINK'] + " --test") >> >> # Final print out. >> print "\n\n\n" >> --- relax-1.3.0.orig/sconstruct 2007-02-19 00:36:06.000000000 -0500 >> +++ relax-1.3.0/sconstruct 2008-08-11 02:02:56.000000000 -0400 >> @@ -94,7 +94,7 @@ >> SYS = SYSTEM >> >> # Mac OS X installation path. >> - INSTALL_PATH = sys.prefix + sep + 'local' >> + INSTALL_PATH = 'FINK_INSTALL_DIR' + sep + 'lib' >> >> >> # All other operating systems. >> @@ -111,16 +111,15 @@ >> ############### >> >> # Relax installation directory. >> -RELAX_PATH = INSTALL_PATH + sep + 'relax' >> +RELAX_PATH = INSTALL_PATH + sep + 'relax-py2X' >> >> # Installation path for binaries. >> -BIN_PATH = INSTALL_PATH + sep + 'bin' >> +BIN_PATH = 'FINK_INSTALL_DIR' + sep + 'bin' >> >> # Symbolic link installation path. >> SYMLINK = BIN_PATH + sep + 'relax' >> >> >> - >> # The distribution files. >> ######################### >> >> @@ -486,7 +485,7 @@ >> >> # Catch Mac OS X and send the correct command line options to the >> linker (these may become redundant as SCons improves). >> if env['PLATFORM'] == 'darwin': >> - env.Append(LINKFLAGS = ['-bundle', '-bundle_loader', sys.prefix >> + path.sep + 'bin' + path.sep + 'python', '-dynamic']) >> + env.Append(LINKFLAGS = ['-bundle', '-bundle_loader', sys.prefix >> + path.sep + 'bin' + path.sep + 'python2.X', '-dynamic']) >> env['SHLINKFLAGS'] = SCons.Util.CLVar('$LINKFLAGS') >> env['SHLIBSUFFIX'] = '.so' >> >> >> to build against the fink python24 and python25 packages. >> Jack >> >> On Mon, Aug 17, 2009 at 03:55:06PM +0200, Edward d'Auvergne wrote: >>> Hi, >>> >>> It could be, that Python 2.6 dynamically linked libraries are now >>> compiled differently to earlier Python versions. I'll have to look >>> that up as well. Would you know the linker options now required? >>> >>> Cheers, >>> >>> Edward >>> >>> >>> 2009/8/17 Jack Howarth <[email protected]>: >>> > Edward, >>> > I think I see the problem. The link line is missing a linkage on either >>> > /sw/lib/python2.6/config/libpython2.6.a or >>> > /sw/lib/python2.6/config/libpython2.6,dylib. >>> > What do you have for the linkage of maths_fns/relax_fit.so on linux? Does >>> > that build explicitly link in the python library? >>> > Jack >>> > >>> > >>> > On Mon, Aug 17, 2009 at 11:50:10AM +0200, Edward d'Auvergne wrote: >>> >> Hi, >>> >> >>> >> Thank you for building these packages (or at least attempting for now >>> >> ;). I'm still looking into the problem, but it's looking like the >>> >> Python header files are missing or are from an old version. Do you >>> >> know if this could be the issue, that the Python development packages >>> >> are out of date or are missing? >>> >> >>> >> Cheers, >>> >> >>> >> Edward >>> >> >>> >> >>> >> >>> >> On Sun, Aug 16, 2009 at 4:08 AM, Jack Howarth<[email protected]> >>> >> wrote: >>> >> > Edward, >>> >> > I am trying to build updated relax-py packaging >>> >> > for fink using the 1.3.4 release on x86_64 fink >>> >> > with python2.6. Although your web page indicates >>> >> > that the binaries available are built against >>> >> > python 2.5 and 2.6, I am seeing build failures >>> >> > when I try here with scons 1.2.0... >>> >> > >>> >> > /sw/bin/python2.6 /sw/bin/scons >>> >> > scons: Reading SConscript files ... >>> >> > scons: done reading SConscript files. >>> >> > scons: Building targets ... >>> >> > >>> >> > >>> >> > >>> >> > >>> >> > ########################### >>> >> > # Compiling the C modules # >>> >> > ########################### >>> >> > >>> >> > >>> >> > Building the relaxation curve fitting module 'maths_fns/relax_fit.so' >>> >> > >>> >> > gcc -o maths_fns/c_chi2.os -c -I/sw/include/python2.6 >>> >> > -I/sw/lib/python2.6/site-packages/numpy/core/include -fPIC >>> >> > maths_fns/c_chi2.c >>> >> > gcc -o maths_fns/exponential.os -c -I/sw/include/python2.6 >>> >> > -I/sw/lib/python2.6/site-packages/numpy/core/include -fPIC >>> >> > maths_fns/exponential.c >>> >> > gcc -o maths_fns/relax_fit.os -c -I/sw/include/python2.6 >>> >> > -I/sw/lib/python2.6/site-packages/numpy/core/include -fPIC >>> >> > maths_fns/relax_fit.c >>> >> > gcc -o maths_fns/relax_fit.so -bundle -bundle_loader /sw/bin/python2.6 >>> >> > -dynamic maths_fns/c_chi2.os maths_fns/exponential.os >>> >> > maths_fns/relax_fit.os >>> >> > Undefined symbols: >>> >> > "_PyArg_ParseTupleAndKeywords", referenced from: >>> >> > _setup in relax_fit.os >>> >> > "_PyErr_Print", referenced from: >>> >> > _initrelax_fit in relax_fit.os >>> >> > "_Py_InitModule4_64", referenced from: >>> >> > _initrelax_fit in relax_fit.os >>> >> > "_PyArg_ParseTuple", referenced from: >>> >> > _func in relax_fit.os >>> >> > _dfunc in relax_fit.os >>> >> > "_PyExc_RuntimeError", referenced from: >>> >> > __import_array in exponential.os >>> >> > __import_array in exponential.os >>> >> > __import_array in exponential.os >>> >> > __import_array in relax_fit.os >>> >> > __import_array in relax_fit.os >>> >> > __import_array in relax_fit.os >>> >> > "_PyList_New", referenced from: >>> >> > _back_calc_I in relax_fit.os >>> >> > "__Py_NoneStruct", referenced from: >>> >> > _setup in relax_fit.os >>> >> > _setup in relax_fit.os >>> >> > _setup in relax_fit.os >>> >> > "_PyExc_ImportError", referenced from: >>> >> > _initrelax_fit in relax_fit.os >>> >> > "_PyCObject_AsVoidPtr", referenced from: >>> >> > __import_array in exponential.os >>> >> > __import_array in relax_fit.os >>> >> > "_PyCObject_Type", referenced from: >>> >> > __import_array in exponential.os >>> >> > __import_array in relax_fit.os >>> >> > "_PyImport_ImportModule", referenced from: >>> >> > __import_array in exponential.os >>> >> > __import_array in relax_fit.os >>> >> > "_PyErr_SetString", referenced from: >>> >> > _initrelax_fit in relax_fit.os >>> >> > "_PyErr_Format", referenced from: >>> >> > __import_array in exponential.os >>> >> > __import_array in exponential.os >>> >> > __import_array in exponential.os >>> >> > __import_array in relax_fit.os >>> >> > __import_array in relax_fit.os >>> >> > __import_array in relax_fit.os >>> >> > "_PyList_SetItem", referenced from: >>> >> > _back_calc_I in relax_fit.os >>> >> > "_PyObject_GetAttrString", referenced from: >>> >> > __import_array in exponential.os >>> >> > __import_array in relax_fit.os >>> >> > "_Py_BuildValue", referenced from: >>> >> > _func in relax_fit.os >>> >> > _d2func in relax_fit.os >>> >> > _back_calc_I in relax_fit.os >>> >> > ld: symbol(s) not found >>> >> > >>> >> > Is the 1.3.4 release really python2.6 compatible or do I need >>> >> > additional >>> >> > patches? Thanks in advance for any information. >>> >> > Jack >>> >> > ps I am updating the minfx-py package to the newer 1.0.2 release of >>> >> > course for the python 2.6 compatibility changes. >>> >> > >>> >> > _______________________________________________ >>> >> > relax (http://nmr-relax.com) >>> >> > >>> >> > This is the relax-users mailing list >>> >> > [email protected] >>> >> > >>> >> > To unsubscribe from this list, get a password >>> >> > reminder, or change your subscription options, >>> >> > visit the list information page at >>> >> > https://mail.gna.org/listinfo/relax-users >>> >> > >>> > >> > _______________________________________________ relax (http://nmr-relax.com) This is the relax-users mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-users
