Edward,
I'll have to look into that as I'm not very familar with scons.
Currently for 1.3.3, it is sufficient to use...
--- relax-1.3.0.orig/relax 2007-02-19 00:36:06.000000000 -0500
+++ relax-1.3.0/relax 2008-08-11 02:13:30.000000000 -0400
@@ -1,4 +1,4 @@
-#! /usr/bin/env python
+#! /usr/bin/env python2.X
###############################################################################
# #
--- relax-1.3.0/scons/install.py.sav 2008-08-10 15:31:01.000000000 -0400
+++ relax-1.3.0/scons/install.py 2008-08-10 16:01:22.000000000 -0400
@@ -112,8 +112,8 @@
###############
# Run relax to create the *.pyc files.
- print "\nRunning relax to create the byte-compiled *.pyc files."
- system(env['SYMLINK'] + " --test")
+ # print "\nRunning relax to create the byte-compiled *.pyc files."
+ # system(env['SYMLINK'] + " --test")
# Final print out.
print "\n\n\n"
--- relax-1.3.0.orig/sconstruct 2007-02-19 00:36:06.000000000 -0500
+++ relax-1.3.0/sconstruct 2008-08-11 02:02:56.000000000 -0400
@@ -94,7 +94,7 @@
SYS = SYSTEM
# Mac OS X installation path.
- INSTALL_PATH = sys.prefix + sep + 'local'
+ INSTALL_PATH = 'FINK_INSTALL_DIR' + sep + 'lib'
# All other operating systems.
@@ -111,16 +111,15 @@
###############
# Relax installation directory.
-RELAX_PATH = INSTALL_PATH + sep + 'relax'
+RELAX_PATH = INSTALL_PATH + sep + 'relax-py2X'
# Installation path for binaries.
-BIN_PATH = INSTALL_PATH + sep + 'bin'
+BIN_PATH = 'FINK_INSTALL_DIR' + sep + 'bin'
# Symbolic link installation path.
SYMLINK = BIN_PATH + sep + 'relax'
-
# The distribution files.
#########################
@@ -486,7 +485,7 @@
# Catch Mac OS X and send the correct command line options to the
linker (these may become redundant as SCons improves).
if env['PLATFORM'] == 'darwin':
- env.Append(LINKFLAGS = ['-bundle', '-bundle_loader', sys.prefix +
path.sep + 'bin' + path.sep + 'python', '-dynamic'])
+ env.Append(LINKFLAGS = ['-bundle', '-bundle_loader', sys.prefix +
path.sep + 'bin' + path.sep + 'python2.X', '-dynamic'])
env['SHLINKFLAGS'] = SCons.Util.CLVar('$LINKFLAGS')
env['SHLIBSUFFIX'] = '.so'
to build against the fink python24 and python25 packages.
Jack
On Mon, Aug 17, 2009 at 03:55:06PM +0200, Edward d'Auvergne wrote:
> Hi,
>
> It could be, that Python 2.6 dynamically linked libraries are now
> compiled differently to earlier Python versions. I'll have to look
> that up as well. Would you know the linker options now required?
>
> Cheers,
>
> Edward
>
>
> 2009/8/17 Jack Howarth <[email protected]>:
> > Edward,
> > I think I see the problem. The link line is missing a linkage on either
> > /sw/lib/python2.6/config/libpython2.6.a or
> > /sw/lib/python2.6/config/libpython2.6,dylib.
> > What do you have for the linkage of maths_fns/relax_fit.so on linux? Does
> > that build explicitly link in the python library?
> > Jack
> >
> >
> > On Mon, Aug 17, 2009 at 11:50:10AM +0200, Edward d'Auvergne wrote:
> >> Hi,
> >>
> >> Thank you for building these packages (or at least attempting for now
> >> ;). I'm still looking into the problem, but it's looking like the
> >> Python header files are missing or are from an old version. Do you
> >> know if this could be the issue, that the Python development packages
> >> are out of date or are missing?
> >>
> >> Cheers,
> >>
> >> Edward
> >>
> >>
> >>
> >> On Sun, Aug 16, 2009 at 4:08 AM, Jack Howarth<[email protected]>
> >> wrote:
> >> > Edward,
> >> > I am trying to build updated relax-py packaging
> >> > for fink using the 1.3.4 release on x86_64 fink
> >> > with python2.6. Although your web page indicates
> >> > that the binaries available are built against
> >> > python 2.5 and 2.6, I am seeing build failures
> >> > when I try here with scons 1.2.0...
> >> >
> >> > /sw/bin/python2.6 /sw/bin/scons
> >> > scons: Reading SConscript files ...
> >> > scons: done reading SConscript files.
> >> > scons: Building targets ...
> >> >
> >> >
> >> >
> >> >
> >> > ###########################
> >> > # Compiling the C modules #
> >> > ###########################
> >> >
> >> >
> >> > Building the relaxation curve fitting module 'maths_fns/relax_fit.so'
> >> >
> >> > gcc -o maths_fns/c_chi2.os -c -I/sw/include/python2.6
> >> > -I/sw/lib/python2.6/site-packages/numpy/core/include -fPIC
> >> > maths_fns/c_chi2.c
> >> > gcc -o maths_fns/exponential.os -c -I/sw/include/python2.6
> >> > -I/sw/lib/python2.6/site-packages/numpy/core/include -fPIC
> >> > maths_fns/exponential.c
> >> > gcc -o maths_fns/relax_fit.os -c -I/sw/include/python2.6
> >> > -I/sw/lib/python2.6/site-packages/numpy/core/include -fPIC
> >> > maths_fns/relax_fit.c
> >> > gcc -o maths_fns/relax_fit.so -bundle -bundle_loader /sw/bin/python2.6
> >> > -dynamic maths_fns/c_chi2.os maths_fns/exponential.os
> >> > maths_fns/relax_fit.os
> >> > Undefined symbols:
> >> > "_PyArg_ParseTupleAndKeywords", referenced from:
> >> > _setup in relax_fit.os
> >> > "_PyErr_Print", referenced from:
> >> > _initrelax_fit in relax_fit.os
> >> > "_Py_InitModule4_64", referenced from:
> >> > _initrelax_fit in relax_fit.os
> >> > "_PyArg_ParseTuple", referenced from:
> >> > _func in relax_fit.os
> >> > _dfunc in relax_fit.os
> >> > "_PyExc_RuntimeError", referenced from:
> >> > __import_array in exponential.os
> >> > __import_array in exponential.os
> >> > __import_array in exponential.os
> >> > __import_array in relax_fit.os
> >> > __import_array in relax_fit.os
> >> > __import_array in relax_fit.os
> >> > "_PyList_New", referenced from:
> >> > _back_calc_I in relax_fit.os
> >> > "__Py_NoneStruct", referenced from:
> >> > _setup in relax_fit.os
> >> > _setup in relax_fit.os
> >> > _setup in relax_fit.os
> >> > "_PyExc_ImportError", referenced from:
> >> > _initrelax_fit in relax_fit.os
> >> > "_PyCObject_AsVoidPtr", referenced from:
> >> > __import_array in exponential.os
> >> > __import_array in relax_fit.os
> >> > "_PyCObject_Type", referenced from:
> >> > __import_array in exponential.os
> >> > __import_array in relax_fit.os
> >> > "_PyImport_ImportModule", referenced from:
> >> > __import_array in exponential.os
> >> > __import_array in relax_fit.os
> >> > "_PyErr_SetString", referenced from:
> >> > _initrelax_fit in relax_fit.os
> >> > "_PyErr_Format", referenced from:
> >> > __import_array in exponential.os
> >> > __import_array in exponential.os
> >> > __import_array in exponential.os
> >> > __import_array in relax_fit.os
> >> > __import_array in relax_fit.os
> >> > __import_array in relax_fit.os
> >> > "_PyList_SetItem", referenced from:
> >> > _back_calc_I in relax_fit.os
> >> > "_PyObject_GetAttrString", referenced from:
> >> > __import_array in exponential.os
> >> > __import_array in relax_fit.os
> >> > "_Py_BuildValue", referenced from:
> >> > _func in relax_fit.os
> >> > _d2func in relax_fit.os
> >> > _back_calc_I in relax_fit.os
> >> > ld: symbol(s) not found
> >> >
> >> > Is the 1.3.4 release really python2.6 compatible or do I need additional
> >> > patches? Thanks in advance for any information.
> >> > Jack
> >> > ps I am updating the minfx-py package to the newer 1.0.2 release of
> >> > course for the python 2.6 compatibility changes.
> >> >
> >> > _______________________________________________
> >> > relax (http://nmr-relax.com)
> >> >
> >> > This is the relax-users mailing list
> >> > [email protected]
> >> >
> >> > To unsubscribe from this list, get a password
> >> > reminder, or change your subscription options,
> >> > visit the list information page at
> >> > https://mail.gna.org/listinfo/relax-users
> >> >
> >
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